MapMan
is a user-driven tool that displays large datasets (e.g. gene
expression data from Arabidopsis Affymetrix arrays) onto
diagrams of metabolic pathways or other processes.
MapMan was developed in cooperation with the group of Mark Stitt.
For technical details, please contact Axel Nagel, for other
questions, please contact Björn Usadel.
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Download new MapMan Software 2.2.0:
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| Version 2.2.0 from 08.07.2008 includes now mapping of data onto chromosomal maps as well as a new simplified first user interface |
Download old MapMan Software 2.1.1:
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| Version 2.1.1 from 12.09.2007 includes clustering visualization, many usability enhancements and bug fixes |
| View Applicable License agreement |
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Download
MapMan pathway, mapping and sample data files. |
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MapMan
Forum:
Post your questions, feature request and bug reports. |
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MapMan
web-application: View some sample data sets. |
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MapMan
annotation experts |
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MapMan Help ( how to use ) view as html, download MapMan_Help.pdf. |
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Reference:
Thimm O, Blaesing O, Gibon Y, Nagel A, Meyer S, Krüger P,
Selbig J, Müller LA, Rhee SY, Stitt M. MAPMAN: a
user-driven tool to display genomics data sets onto diagrams of
metabolic pathways and other biological processes. Plant J. 2004
Mar;37(6):914-39.
Selected as fast breaking paper in
plant and animal sciences:
http://www.esi-topics.com/fbp/2005/february05-OliverThimm.html
75 times cited (June 2006). |
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Reference:
Usadel B, Nagel A, Thimm O, Redestig H, Blaesing OE,
Palacios-Rojas N, Selbig J, Hannemann J, Piques MC, Steinhauser
D, Scheible WR, Gibon Y, Morcuende R, Weicht D, Meyer S, Stitt
M., Extension of the visualization tool MapMan to allow
statistical analysis of arrays, display of corresponding genes,
and comparison with known responses. Plant Physiol. 2005
Jul;138(3):1195-204. |
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Acknowledgement: We
would like to thank the TAIR
team for their kind support in data annotation and good advices. |
