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Download GabiPD data and software



SOFTWARE
MapMan desktop version
A user-driven tool that displays large datasets (e.g. gene expression data from Arabidopsis Affymetrix arrays) onto diagrams of metabolic pathways or other processes. MapMan was developed in cooperation with the group of Mark Stitt. B. Usadel et al. 2005. Plant Physiol. 138:1195-1204
SATlotyper Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT J. Neigenfind et al. 2008. BMC Bioinformatics 9:356
SEQUENCES
GabiPD public All publicly accessible nucleotide sequence data from diverse GABI projects.
Gabi clones Arabidopsis Sequence data from Arabidopsis cDNA clones. Clones are available from imaGenes.
GabiPD Arabidopsis thaliana All public nucleotide sequence data from Arabidopsis.
Gabi T-DNA Arabidopsis thaliana T-DNA flanking nucleotide sequences from Arabidopsis T-DNA insertion lines, available from MPIZ Cologne (GABI-KAT).
GabiPD Beta vulgaris All public Beta vulgaris nucleotide sequence data from GABI projects.
GabiPD Brassica napus All public Brassica napus nucleotide sequence data from GABI projects.
GabiPD Chlamydomonas reinhardtii All public Chlamydomonas reinhardtii nucleotide sequence.
Gabi clones Hordeum vulgare Sequence data from Barley cDNA clones. Clones are available from imaGenes.
GabiPD Hordeum vulgare All Hordeum vulgare nucleotide sequence data, which are accessible for the public.
GabiPD Solanum tuberosum All Solanum tuberosum nucleotide sequence data, which are accessible for the public.
Sunflower short reads and assembly Description: Originating from population (cms)HA342xARG1575-2 which segregates for downy mildew resistance, two phenotypically contrasting cDNA bulks, BR (resistant bulk) and BS (susceptible bulk), were generated and used for 454 pyrosequencing.
trimmed 454 reads for BR
trimmed 454 reads for BS
Assembly file
contains fasta sequences for 46881 isotigs > 499 nt assembled from BR and BS.
Diversity panel of 253 sunflower accessions Description: Desciption of files
Hapgip1.fasta
Hapgip2.fasta
Hapgip3.fasta
Hapgip4.fasta
pgips_wildHeliantheae.fasta
Potato BAC sequences BA111o5
BA122p13
BA132h9
BA151m8
BA213c14
BA27c1
BA47f2
BA76o11
BA87d17
BC136j5
BC93c12
all BAC sequences
Barley genome sequencing (GABI-BARLEX) Chromosome 1H short reads
Barlex_WCA1H_T1 SRX006855
Barlex_WCA1H_T1 SRX006855
Barlex_WCA1H_T2 SRX006856
Barlex_WCA1H_T2 SRX006856
Barlex_WCA1H_T2 SRX006856
Barlex_WCA1H_R1 SRX006857
Barlex_WCA1H_R1 SRX006857
Barlex_WCA1H_R2 SRX006858
Barlex_WCA1H_R2 SRX006858
Barlex_WCA1H_R3 SRX006859
Barlex_WCA1H_R3 SRX006859
Barlex_WCA1H_R4 SRX006860
Barlex_WCA1H_R4 SRX006860
Barlex_WCA1H_R5 SRX006861
Barlex_WCA1H_R5 SRX006861
Barlex_WCA1H_R6 SRX006862
Barlex_WCA1H_R6 SRX006862
Barlex_WCAall_T1 SRX006863
Barlex_WCAall_T1 SRX006863
Barlex_WCAall_T2 SRX006864
Barlex_WCAall_T2 SRX006864
Barlex_WCAall_T2 SRX006864
Barlex_WCAall_R1 SRX006865
Barlex_WCAall_R2 SRX006866
Sorted chromosomes short reads.
H = indicates barley (Hordeum) chromosomes
A = indicates homoeologous chromosome set A of wheat (A of ABD)
L = long arm of the respective chromosome
S = short arm of the respective chromosome
WCA = whole chromosome amplified
Chinese Spring = wheat (Triticum aestivum) cultivar
Betzes = barley (Hordeum vulgare ssp. vulgare) cultivar
WCA1ASChineseSpring (full data set - 1.6 GB)
or single data files
FYPRMY201
FYPRMY202
WCA1HBetzes (full data set - 3.0 GB)
or single data files
F151T9F01
F151T9F02
F28XXOW01
F4BMJKH01
F4BMJKH02
WCA2HLBetzes (full data set - 2.7 GB)
or single data files
FTR0EHA01
FVG2LPQ01
FVG2LPQ02
WCA2HSBetzes (full data set - 1.6 GB)
or single data files
FVE77JW01
FVE77JW02
WCA3HLBetzes (full data set - 3.3 GB)
or single data files
FSHS8SA01
FSHS8SA02
FSSWHZR01
FSSWHZR02
FTFGSK001
WCA3HSBetzes (full data set - 1.9 GB)
or single data files
FS30M0W01
FS30M0W02
FTFGSK002
FTFGSK003
FTFGSK004
WCA4HLBetzes (full data set - 2.7 GB)
or single data files
FWJZZ8F01
FWJZZ8F02
FXOP1H101
WCA4HSBetzes (full data set - 1.9 GB)
or single data files
FWLU4E401
FWLU4E402
FXI69Q401
WCA5HLBetzes (full data set - 2.7 GB)
or single data files
FXBQQIN01
FXBQQIN02
FXOP1H102
WCA5HSBetzes (full data set - 2.2 GB)
or single data files
FXI69Q402
FXV4SVK01
FXV4SVK02
WCA6HLBetzes (full data set - 2.8 GB)
or single data files
FYJ6RU401
FYJ6RU402
FYVA09U02
WCA6HSBetzes (full data set - 2.4 GB)
or single data files
FX84EFC01
FX84EFC02
FYVA09U01
WCA7HLBetzes (full data set - 1.9 GB)
or single data files
FUYK5KB01
FUYK5KB02
WCA7HSBetzes (full data set - 1.9 GB)
or single data files
FULMQYZ01
FULMQYZ02
Barley genome sequencing (GABI-BARLEX). BAC short reads several pools.
V1 - V17, V25 - V36 FLX
V1 V2 V3 V4 V5 V6 V7 V8 V9 V10
V11 V12 V13 V14 V15 V16 V17 V25 V26 V27
V28 V29 V30 V31 V32 V33 V34 V35 V36
V19 - V24, V37 - V80 Titanium
V19 V20 V21 V22 V23 V24 V37 V38 V39 V40
V41 V42 V43 V44 V45 V46 V47 V48 V49 V50
V51 V52 V53 V54 V55 V56 V57 V58 V59 V60
V61 V62 V63 V64 V65 V66 V67 V68 V69 V70
V71 V72 V73 V74 V75 V76 V77 V78 V79 V80
V18 50% FLX, 50% Titanium
V18
V0, V81 FLX Titanium
V0 V81
Rye genome sequencing (RYE-EXPRESS) Short reads raw data of five rye inbred lines
Lo152
Lo225
Lo7-N
P105
P87
Assembly01 containing 252042 contigs
Assembly02 containing 138339 contigs
Assembly03 containing 115400 contigs
DATASETS
Potato genetic maps
Source: PoMaMo
ChromosomeMap F1840Map BC916.2
Chr 1 F1840 BC916.2
Chr 2 F1840 BC916.2
Chr 3 F1840 BC916.2
Chr 4 F1840 BC916.2
Chr 5 F1840 BC916.2
Chr 6 F1840 BC916.2
Chr 7 F1840 BC916.2
Chr 8 F1840 BC916.2
Chr 9 F1840 BC916.2
Chr 10 F1840 BC916.2
Chr 11 F1840 BC916.2
Chr 12 F1840 BC916.2
EST clusters
UNIgene set of Barley cDNA clones Source: IPK Gatersleben
Distinct clone list
Phosphoproteomics
In vitro substrates of Arabidopsis kinases Substrates were identified by kinase assays on protein microarrays.
Source: Ara Prot
According to references:
S. Popescu et al. 2009
T. Feilner et al. 2005
Single nucleotide polymorphims (SNPs)
Non-redundant collection of Arabidopsis SNPs This file contains a table in TAB delimited format with a non-reduntant collection of SNPs according to the references below. SNPs are mapped to cDNAs in the A. thaliana genome annotation version TAIR7.
Nordborg et al (2005)
Clark et al (2007)
Ossowski et al (2008)

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