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Text based search for sequence, mapping, snp data etc: Secure BLAST search against different public databases or non-public sequence data stored in GabiPD. >> go >>
 
Visualisation of genetic or physical maps. >> go >> View interactive 2D-gels and view or download information for identified protein spots. >> go >>
We kindly ask users to cite the following paper when publishing results derived from the use of GabiPD:
Riaño-Pachón DM, Nagel A, Neigenfind J, Wagner R, Basekow R, Weber E, Mueller-Roeber B, Diehl S and B Kersten (2009) GabiPD: the GABI primary database – a plant integrative ‘omics‘ database. Nucleic Acids Research 37(Database issue):D954-9.

News

Archive
Short reads from 2000 BACs and individual barley chromosomes are exclusively available for WPG members (01-FEB-10)
• Short reads, obtained using 454 technology, from Barley individual chromosomes and 2000 BACs, generated within the GABI-BARLEX project at IPK are exclusively available for WPG members in our Download page, search for GABI-BARLEX.
Short reads from Barley Chromosome 1H are publicly available (21-JAN-10)
• Short reads, obtained using 454 technology, from Barely chromosome 1H generated within the GABI-BARLEX project at IPK are publicly available in our Download page, search for GABI-BARLEX.
All GabiPD clones similarity-based mapped to up-to-date database versions (11-JAN-10)
•All clone sequences in GabiPD have been similarity-based mapped to NCBI's UniGenes(Dec2009), UniProt v15.12 (UniRef100), Arabidopsis TAIR9 and Rice MSU6.1.
• Results are available in every clone GreenCard in the section 'View Blast Searches', and 'Related with'.
View example (Arabidopsis)
Partial sequences of 2000 BAC clones from Hordeum vulgare cultivar Morex exclusively available for WPG participants (11-JAN-10)
• Sequences were generated using 454 technology within the GABI-BARLEX project at IPK.
• Please find the data via GreenCards with the keyword "HVVMRXALL*".
Arabidopsis thaliana SNPs mapping onto cDNAs integrated in GabiPD (24-DEC-09)
•Single nucleotide polymorphisms from three genome-wide natural variation studies (Nordborg et al., 2005; Clark et al., 2007; Ossowski et al., 2008) were mapped onto the Arabidopsis thaliana genome annotation (release TAIR7.0) and are available through Gene GreenCards
• Example At1g01010.1.
Download annotated 2DE gels images in SVG format (01-DEC-09)
• 2DE gel images can now be downloaded in Scalable Vector Graphics (SVG) format and visualized in supporting web browsers (preferred way, e.g., Firefox or Safari) or standalone software, e.g., Inkscape.

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