Home    Contact   FAQs   Imprint   Login  
 
 
 
 
 
 
 
 
 
   
 
   
 
  
 
   

BioTools

GabiPD released tools



MapMan desktop versionA user-driven tool that displays large datasets (e.g. gene expression data from Arabidopsis Affymetrix arrays) onto diagrams of metabolic pathways or other processes. MapMan was developed in cooperation with the group of Mark Stitt.B. Usadel et al. 2005. Plant Physiol. 138:1195-1204
SATlotyperHaplotype inference from unphased SNP data in heterozygous polyploids based on SATJ. Neigenfind et al. 2008. BMC Bioinformatics 9:356
SLocXPrediction of protein subcellular localization using gene expressionRyngajllo et al. 2011. Front Plant Sci 2:43



GabiPD's EMBOSS(v2.9.0) Interface

more Information...


Emma Multiple alignment program - interface to ClustalW(v1.83) program >> go >>
more Information...
Transeq Translate nucleic acid sequences >> go >>
more Information...
Backtranseq Back translate a protein sequence >> go >>
more Information...
Restrict Finds restriction enzyme cleavage sites >> go >>
more Information...
Getorf Finds and extracts open reading frames (ORFs) >> go >>
more Information...
Einverted Finds DNA inverted repeats >> go >>
more Information...
Etandem Looks for tandem repeats in a nucleotide sequence >> go >>
more Information...
Palindrome Looks for inverted repeats in a nucleotide sequence >> go >>
more Information...
Fuzznuc Nucleic acid pattern search >> go >>
more Information...
Seqret Reads and writes (returns) original/reverse sequences >> go >>
more Information...
Eprimer3 Picks PCR primers and hybridization oligos >> go >>
more Information...

GabiPD Webmaster