BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 229305|433 (338 letters) Database: non redundant GenBank CDS translations \+ PDB \+ SwissProt \+ PIR 2,870,162 sequences; 997,129,685 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAA42727.1| photosystem I polypeptide PSI-G precursor [Horde... 107 1e-22 emb|CAJ75642.1| photosystem 1 subunit 5 [Triticum aestivum] 107 1e-22 emb|CAJ26374.1| photosystem 1 subunit 5 [Brachypodium sylvaticum] 103 2e-21 ref|NP_175963.1| unknown protein [Arabidopsis thaliana] >gi|1264... 96 4e-19 dbj|BAD46343.1| putative Photosystem I reaction center subunit V... 95 8e-19 emb|CAA31524.1| unnamed protein product [Spinacia oleracea] >gi|... 94 2e-18 gb|AAD46189.1| photosystem I reaction center subunit V precursor... 62 6e-09 >emb|CAA42727.1| photosystem I polypeptide PSI-G precursor [Hordeum vulgare] sp|Q00327|PSAG_HORVU Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) Length = 143 Score = 107 bits (267), Expect = 1e-22 Identities = 50/50 (100%), Positives = 50/50 (100%) Frame = +3 Query: 12 RAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 161 RAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG Sbjct: 94 RAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143 >emb|CAJ75642.1| photosystem 1 subunit 5 [Triticum aestivum] Length = 143 Score = 107 bits (267), Expect = 1e-22 Identities = 50/50 (100%), Positives = 50/50 (100%) Frame = +3 Query: 12 RAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 161 RAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG Sbjct: 94 RAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143 >emb|CAJ26374.1| photosystem 1 subunit 5 [Brachypodium sylvaticum] Length = 143 Score = 103 bits (257), Expect = 2e-21 Identities = 48/50 (96%), Positives = 49/50 (98%) Frame = +3 Query: 12 RAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 161 RAKEFAGILKSNDPVGFN+VDVLAWGSIGHIVAYYILATTSNGYDP FFG Sbjct: 94 RAKEFAGILKSNDPVGFNIVDVLAWGSIGHIVAYYILATTSNGYDPSFFG 143 >ref|NP_175963.1| unknown protein [Arabidopsis thaliana] gb|AAK00374.1| putative photosystem I subunit V precursor [Arabidopsis thaliana] gb|AAG41452.1| putative photosystem I subunit V precursor [Arabidopsis thaliana] gb|AAK91476.1| At1g55670/F20N2_3 [Arabidopsis thaliana] gb|AAK55662.1| At1g55670/F20N2_3 [Arabidopsis thaliana] gb|AAG40061.1| At1g55670 [Arabidopsis thaliana] emb|CAB52748.1| photosystem I subunit V precursor [Arabidopsis thaliana] sp|Q9S7N7|PSAG_ARATH Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) Length = 160 Score = 95.9 bits (237), Expect = 4e-19 Identities = 42/50 (84%), Positives = 47/50 (94%) Frame = +3 Query: 12 RAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 161 RAKE+ +LKSNDP+GFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG Sbjct: 111 RAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160 >dbj|BAD46343.1| putative Photosystem I reaction center subunit V [Oryza sativa (japonica cultivar-group)] dbj|BAD33396.1| putative Photosystem I reaction center subunit V [Oryza sativa (japonica cultivar-group)] Length = 141 Score = 94.7 bits (234), Expect = 8e-19 Identities = 43/49 (87%), Positives = 47/49 (95%) Frame = +3 Query: 12 RAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFF 158 RAKEFAG+L+SNDPVGFNLVDVLAWGS+GHIVAYYILAT SNGY+P FF Sbjct: 93 RAKEFAGLLRSNDPVGFNLVDVLAWGSLGHIVAYYILATCSNGYNPNFF 141 >emb|CAA31524.1| unnamed protein product [Spinacia oleracea] sp|P12357|PSAG_SPIOL Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) prf||1413236B photosystem I reaction center V Length = 167 Score = 93.6 bits (231), Expect = 2e-18 Identities = 42/49 (85%), Positives = 45/49 (91%) Frame = +3 Query: 12 RAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFF 158 RAKE+ +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT SNGYDP FF Sbjct: 119 RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167 >gb|AAD46189.1| photosystem I reaction center subunit V precursor [Tortula ruralis] sp|Q9SPM4|PSAG_TORRU Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) Length = 112 Score = 62.0 bits (149), Expect = 6e-09 Identities = 25/38 (65%), Positives = 33/38 (86%) Frame = +3 Query: 33 ILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYD 146 +LK+NDP GF LVDVLAWG++GH V ++ILAT +NGY+ Sbjct: 72 MLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109 Database: non redundant GenBank CDS translations \+ PDB \+ SwissProt \+ PIR Posted date: May 19, 2006 3:38 PM Number of letters in database: 997,129,685 Number of sequences in database: 2,870,162 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 434,109,180 Number of Sequences: 2870162 Number of extensions: 7108112 Number of successful extensions: 20821 Number of sequences better than 1.0e-08: 7 Number of HSP's better than 0.0 without gapping: 20264 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 20731 length of database: 997,129,685 effective HSP length: 80 effective length of database: 767,516,725 effective search space used: 24560535200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
