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Sample: 258434_at  (Affymetrix GeneChip: Arabidopsis Genome ATH1 Array Feature)

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Sample information:
analysis GabiPD: 11 oligo sequences out of 11 oligos hit At3g16770

Gene expression results, fold change ≥ |2|
genotoxic stress
   GENOTOXIC 24H ROOT vs CONTROL 24H ROOT

Related with
734E09 T-DNA Line
AT3G16770.1 annotated gene (TAIR7)
AT3G16770.1 annotated gene (TAIR9)
At3g16770 annotated gene (TIGR5)
At.24773 unigene cluster
 
Sequence: 258434_at
submitter of sequence: public data
length: 747
description: At3g16770; AP2 domain containing protein RAP2.3 identical to GB:AAC49769 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:35981. 
258434_at
atgtgtggcg gtgctattat ttccgattat gcccctctcg tcaccaaggc caagggccgt         60
aaactcacgg ctgaggaact ctggtcagag ctcgatgctt ccgccgccga cgacttctgg        120
ggtttctatt ccacctccaa actccatccc accaaccaag ttaacgtgaa agaggaggca        180
gtgaagaagg agcaggcaac agagccgggg aaacggagga agaggaagaa tgtttataga        240
gggatacgta agcgtccatg gggaaaatgg gcggctgaga ttcgagatcc acgaaaaggt        300
gttagagttt ggcttggtac gttcaacacg gcggaggaag ctgccatggc ttatgatgtt        360
gcggccaagc agatccgtgg tgataaagcc aagctcaact tcccagatct gcaccatcct        420
cctcctccta attatactcc tccgccgtca tcgccacgat caaccgatca gcctccggcg        480
aagaaggtct gcgttgtctc tcagagtgag agcgagttaa gtcagccgag tttcccggtg        540
gagtgtatag gatttggaaa tggggacgag tttcagaacc tgagttacgg atttgagccg        600
gattatgatc tgaaacagca gatatcgagc ttggaatcgt tccttgagct ggacggtaac        660
acggcggagc aaccgagtca gcttgatgag tccgtttccg aggtggatat gtggatgctt        720
gatgatgtca ttgcgtcgta tgagtaa                                            747
TypePositionDescription
Oligo 312 - 336: GCTTGGTACGTTCAACACGGCGGAG
Oligo 340 - 364: GCTGCCATGGCTTATGATGTTGCGG
Oligo 355 - 379: GATGTTGCGGCCAAGCAGATCCGTG
Oligo 383 - 407: ATAAAGCCAAGCTCAACTTCCCAGA
Oligo 466 - 490: GATCAGCCTCCGGCGAAGAAGGTCT
Oligo 480 - 504: GAAGAAGGTCTGCGTTGTCTCTCAG
Oligo 512 - 536: GCGAGTTAAGTCAGCCGAGTTTCCC
Oligo 633 - 657: GGAATCGTTCCTTGAGCTGGACGGT
Oligo 649 - 673: CTGGACGGTAACACGGCGGAGCAAC
Oligo 665 - 689: CGGAGCAACCGAGTCAGCTTGATGA
Oligo 680 - 704: AGCTTGATGAGTCCGTTTCCGAGGT
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