GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Clone: MPIZp768P133Q

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	At-7

Library:

	lib name:	MPIZp768
	tissue:	hypocotyl
	stage/tissue:	tissue culture
	cloning vector:	pSPORT1 site_1: NotI primer adapter; site_2: SalI primer adapter
	host:	E. coli DH5alpha mcr
	library description:
	RNA from cellculture (At7) 5 days after inoculation treated with 0.002 mM cycloheximid for 2 h in the dark. Sequence submission managed by RZPD/GABI-Primary database: http://gabi.rzpd.de. This clone is available from RZPD; contact RZPD (clone@rzpd.de) for further information.

Related with

AT2G44840.1	annotated gene (TAIR7)
At.29014	unigene cluster
AT2G44840.1	annotated gene (TAIR9)

Sequence: 56-E010933-019-003-P13-T7R

submitter of sequence:	Prof. Dr. Bernd Weisshaar
length:	452
priming:	5-prime
GenBankAc:	CB254944

56-E010933-019-003-P13-T7R
TCTCACTCTC TAAAATACAC ACTCTCATCA AAAACCTTCT CTTCGGTTCA GAAGCATTCA         60
AGAATCCATT ATGAGCTCAT CTGATTCCGT TAATAACGGC GTTAACTCAC GGATGTACTT        120
CCGTAACCCG AGTTTCAGCA ACGTTATCTT AAACGATAAC TGGAGCGACT TGCCGTTAAG        180
TGTCGACGAT TCTCAAGACA TGGCTATTTA CAACACTCTC CGTGATGCCG TTAGCTCCGG        240
CTGGACACCC TCCGTTCCTC CCGTTACCTC TCCGGCGGAG GAAAATAAGC CTCCGGCGAC        300
GAAGGCGAGT GGCTCACACG CGCCGAGGCA GAAGGGGATG CAGTACAGAG GAGTGAGGAG        360
GAGGCCGTGG GGGAAATTCG CGGCGGAGAT TATGGATCCG AAGAAGAACG GAGCTAGGGT        420
TTGGCTCGGG ACTTACGAAA CGCCGGAGGA CG                                      452

Type	Position	Orientation
ORF	1 - 81:	forward
ORF	3 - 71:	forward
ORF	71 - 451:	forward
ORF	225 - 353:	forward
ORF	451 - 317:	reverse

view Blast Searches

TAIR7_cdna_20070425 on 13-NOV-07
E-val	simil.	overlap	accno	description
00e0	99.5	452	GabiPD:AT2G44840.1 TAIR:AT2G44840.1	AT2G44840.1 \| Symbols: ATERF13, EREBP \| ATERF13/EREBP (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13); DNA binding / transcription factor \| chr2:18502416-18503347 FORWARD
01e-6	82.1	95	GabiPD:AT5G61600.1 TAIR:AT5G61600.1	AT5G61600.1 \| Symbols: \| ethylene-responsive element-binding family protein \| chr5:24783612-24784656 REVERSE
01e-15	86.1	94	GabiPD:AT5G47220.1 TAIR:AT5G47220.1	AT5G47220.1 \| Symbols: ATERF2, ATERF-2, ERF2 \| ATERF-2/ATERF2/ERF2 (ETHYLENE RESPONSE FACTOR 2); DNA binding / transcription factor/ transcriptional activator \| chr5:19189089-19190050 REVERSE
03e-10	84.2	89	GabiPD:AT2G31230.1 TAIR:AT2G31230.1	AT2G31230.1 \| Symbols: ATERF15 \| ATERF15 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 15); DNA binding / transcription factor/ transcriptional activator \| chr2:13313670-13314552 REVERSE
08e-14	90.4	63	GabiPD:AT4G17500.1 TAIR:AT4G17500.1	AT4G17500.1 \| Symbols: ATERF-1 \| ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1); DNA binding / transcription factor/ transcriptional activator \| chr4:9759337-9760353 FORWARD
08e-17	97.9	48	GabiPD:AT4G17490.1 TAIR:AT4G17490.1	AT4G17490.1 \| Symbols: ERF-6-6, ATERF6 \| ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6); DNA binding / transcription factor \| chr4:9752836-9753879 REVERSE
05e-9	91.4	47	GabiPD:AT1G06160.1 TAIR:AT1G06160.1	AT1G06160.1 \| Symbols: \| ethylene-responsive factor, putative \| chr1:1883003-1883933 FORWARD
01e-6	96.7	31	GabiPD:AT1G49120.1 TAIR:AT1G49120.1	AT1G49120.1 \| Symbols: \| AP2 domain-containing transcription factor, putative \| chr1:18177095-18178084 FORWARD
01e-6	100	27	GabiPD:AT5G47230.1 TAIR:AT5G47230.1	AT5G47230.1 \| Symbols: ATERF-5, ATERF5, ERF5 \| ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5); DNA binding / transcription factor/ transcriptional activator \| chr5:19197166-19198356 FORWARD
All nt+env_nt+patnt+pdbnt on 06-APR-10
E-val	simil.	overlap	accno	description
00e1	99.6	452	GenBankAc:BX821822.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL77ZE09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)
00e1	99.6	452	GenBankAc:GP291037.1	Sequence 5 from patent US 7511190
00e1	99.6	452	GenBankAc:GM685590.1	Sequence 1 from Patent EP1950306
00e1	99.6	452	GenBankAc:EA482899.1	Sequence 27 from patent US 7345217
00e1	99.6	452	GenBankAc:CS539237.1	Sequence 49 from Patent WO2006033708
00e1	99.6	452	GenBankAc:EA101670.1	Sequence 127 from patent US 7193129
00e1	99.6	452	GenBankAc:CS493125.1	Sequence 3 from Patent WO2006130156
00e1	99.6	452	GenBankAc:AF370540.1	Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds
00e1	99.6	452	GenBankAc:GP676789.1	Sequence 4647 from patent US 7569389
00e1	99.6	452	GenBankAc:AC002388.3	Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence
00e1	99.6	452	GenBankAc:NM_130048.2	Arabidopsis thaliana ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13); DNA binding / transcription factor (ERF13) mRNA, complete cds
00e1	98.9	452	GenBankAc:GC499853.1	Sequence 1868 from patent US 7396979
00e1	98.9	452	GenBankAc:CS325637.1	Sequence 1868 from Patent WO2006004955
00e1	98.9	452	GenBankAc:AY088387.1	Arabidopsis thaliana clone 6397 mRNA, complete sequence
00e1	99.5	382	GenBankAc:CQ805290.1	Sequence 1701 from Patent WO2004035798
00e1	99.5	382	GenBankAc:AX507520.1	Sequence 2215 from Patent WO0216655
00e1	99.5	382	GenBankAc:AY072471.1	Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds
00e1	99.5	382	GenBankAc:AF325089.1	Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds
Arabidopsis thaliana annotation TAIR 9.0 (cDNA)20091022 on 11-DEC-09
E-val	simil.	overlap	accno	description
00e1	99.6	452	GabiPD:AT2G44840.1 TAIR:AT2G44840.1	AT2G44840.1\|ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13); DNA binding / transcription factor (TAIR 9.0)
UniGeneDec2009.fasta on 14-DEC-09
E-val	simil.	overlap	accno	description
00e1	99.6	452	GabiPD:At.29014 unigene:At.29014	At.29014
UniProt 15.12 UniRef100 on 28-DEC-09
E-val	simil.	overlap	accno	description
01e-27	51.5	134	UniProt_UniRef:UniRef100_B3IX32	Transcription factor AP2-EREBP n=1 Tax=Lotus japonicus RepID=B3IX32_LOTJA
05e-28	51.1	133	UniProt_UniRef:UniRef100_Q9M4Y9	AP2-related transcription factor n=1 Tax=Mesembryanthemum crystallinum RepID=Q9M4Y9_MESCR
02e-29	52.7	129	UniProt_UniRef:UniRef100_Q9LW50	Ethylene-responsive transcription factor 2 n=1 Tax=Nicotiana sylvestris RepID=ERF2_NICSY
02e-27	51.2	129	UniProt_UniRef:UniRef100_A4ZX83	ERF transcription factor n=1 Tax=Solanum tuberosum RepID=A4ZX83_SOLTU
04e-28	54	126	UniProt_UniRef:UniRef100_O04680	Pti4 (Fragment) n=1 Tax=Solanum lycopersicum RepID=O04680_SOLLC
02e-27	52.8	123	UniProt_UniRef:UniRef100_Q40479	Ethylene-responsive transcription factor 2 n=1 Tax=Nicotiana tabacum RepID=ERF2_TOBAC
01e-31	54.1	122	UniProt_UniRef:UniRef100_B9MV98	AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9MV98_POPTR
04e-28	55.4	121	UniProt_UniRef:UniRef100_Q40476	Ethylene-responsive transcription factor 1 n=1 Tax=Nicotiana tabacum RepID=ERF1_TOBAC
08e-29	54.5	121	UniProt_UniRef:UniRef100_A7PBS4	Chromosome chr16 scaffold_10, whole genome shotgun sequence n=2 Tax=Vitis vinifera RepID=A7PBS4_VITVI
03e-62	99.1	114	UniProt_UniRef:UniRef100_Q8L9K1	Ethylene-responsive transcription factor 13 n=1 Tax=Arabidopsis thaliana RepID=ERF99_ARATH

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