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Clone: HC14G21

Genotype (Genotype)
  species: Hordeum vulgare
  type: wildtype
  common name: barley
  cultivar: Sloop
Library:
  lib name: IPKc 2036
  tissue: coleoptile
  stage/tissue: coleoptile, 3 days old
  cloning vector: pSPORT site_1: SalI (5-end of cDNA); site_2: NotI (3-end of cDNA)
  host: DH10B
  antibiotic: Ampicillin
  library description:
  Due to the cloning system used blue/white selection for recombinants is not 100 % reliable. Average insert size is 1.3 kb.

Related with
LOC_Os01g55830.1 annotated gene (TIGR5)
Hv.932 unigene cluster
Hv.3134 unigene cluster
Zm.81924 unigene cluster
Os.97997 unigene cluster
Sbi.17905 unigene cluster
Zm.9 unigene cluster
Sof.20462 unigene cluster
Sbi.14146 unigene cluster
Sbi.18265 unigene cluster
Sbi.17875 unigene cluster
LOC_Os01g55830.1 annotated gene (MSU 6.1)
 
Sequence: HC14G21w
submitter of sequence: Dr. Nils Stein
length: 677
priming: 5-prime
GenBankAc: CB870477
IPK CR-EST: HC14G21w
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
HC14G21w
CACGCGTCCG AGCACAAGAG CCCCGACCAC CTCGCCAGGA ACCCCTTTGG GCAGGTGCCA         60
GCTTTGCAGG ATGGTGACTT GTATGTCTTC GAATCACGTG CTATTTGCAA GTATGCGTGC        120
CGCAAGAACA AGCCAGAGCT GTTGAAGGAG GGCGACATCA AGGAGTCAGC AATGGTGGAT        180
GTGTGGCTCG AGGTGGAGGC CCATCAGTAC ACCGCCGCTC TGAGCCCCAT TCTCTTCGAG        240
TGCCTTATCC ATCCTATGCT TGGGGGAGCC ACTGACCAGA AGGTCATCGA CGACAACCTT        300
GTTAAGATCA AGAACGTGCT GGCGGTGTAC GAGGCGCGGC TCACCAAGTC CAAGTACCTG        360
GCTGGAGACT TCCTCAGCCT TGCGGACCTT AACCATGCGT CTGTCACCCT GTGCTTGGCG        420
GCCACACCCT ATGCATCTCT GTTTGACGCT TACCCGCATG TGAAGGCCTG GTGGACTGAC        480
CTGCTGACGA GGCCGTCCGT CCAGAAGGTC GCTGCGCTGA TGAAGCCATG ATCTTAGTTT        540
CTGGGGCTTG TTCGTCGAAA TAAGCCGAGG TGTGTCACCC CCGATGTGTG CCTTTCCTAG        600
TGTGTGTTCT TGTGATGTGT CCTGGTGTTG AATGTTCAGG CTTGTGCTTG CGATCCTGTC        660
GAATCTTGTA CTTAAAT                                                       677
	      
TypePositionOrientation
ORF 1 - 528: forward
ORF 2 - 142: forward
ORF 3 - 74: forward
ORF 158 - 3: reverse
ORF 287 - 207: reverse
ORF 395 - 460: forward
ORF 529 - 407: reverse
ORF 615 - 677: forward
ORF 675 - 169: reverse
ORF 676 - 578: reverse
Cluster Info:
Contig168.1 (88 members)
view Blast Searches
 
Sequence: HC14G21y
submitter of sequence: Dr. Nils Stein
length: 700
priming: 3-prime
GenBankAc: CB873988
IPK CR-EST: HC14G21y
Sequence features and Clone alignments (BLAST):
Click for Menu

Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
HC14G21y
GAGACAATAT CTGGGCACAA TTTATTATCA AACCAGAGCA CGGGAATGCT CATTTAAGTA         60
CAAGATTCGA CAGGATCGCA AGCACAAGCC TGAACATTCA ACACCAGGAC ACATCACAAG        120
AACACACACT AGGAAAGGCA CACATCGGGG GTGACACACC TCGGCTTATT TCGACGAACA        180
AGCCCCAGAA ACTAAGATCA TGGCTTCATC AGCGCAGCGA CCTTCTGGAC GGACGGCCTC        240
GTCAGCAGGT CAGTCCACCA GGCCTTCACA TGCGGGTAAG CGTCAAACAG AGATGCATAG        300
GGTGTGGCCG CCAAGCACAG GGTGACAGAC GCATGGTTAA GGTCCGCAAG GCTGAGGAAG        360
TCTCCAGCCA GGTACTTGGA CTTGGTGAGC CGCGCCTCGT ACACCGCCAG CACGTTCTTG        420
ATCTTAACAA GGTTGTCGTC GATGACCTTC TGGTCAGTGG CTCCCCCAAG CATAGGATGG        480
ATAAGGCACT CGAAGAGAAT GGGGCTCAGA GCGGCGGTGT ACTGATGGGC CTCCACCTCG        540
AGCCACACAT CCACCATTGC TGACTCCTTG ATGTCGCCCT CCTTCAACAG CTCTGGCTTG        600
TTCTTGCGGC ACGCATACTT GCAAATAGCA CGTGATTCGA AGACATACAA GTCACCATCC        660
TGCAAAGCTG GCACCTGCCC CAAGGGGTTC CTGGCGAGGT                              700
	      
TypePositionOrientation
ORF 2 - 151: forward
ORF 3 - 560: forward
ORF 114 - 31: reverse
ORF 200 - 322: forward
ORF 334 - 269: reverse
ORF 442 - 522: forward
ORF 571 - 699: forward
ORF 698 - 201: reverse
ORF 700 - 587: reverse
Cluster Info:
Contig168.1 (88 members)
view Blast Searches

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