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Gene: LOC_Os02g49230.6


  Alternative name:13102.m12444

Genotype (Genotype)
  species: Oryza sativa japonica
  name: (Japanese rice)
  type: wildtype

Gene function:
protein CCT/B-box zinc finger protein, putative, expressed (TIGR 6.1)

Gene Ontology
GO termIdentifierType
transcriptionGO:0006350biological process
bindingGO:0005488molecular function
transcription factor activityGO:0003700molecular function

Related with
Xa21_454_60848 cDNA clone
HA02L20 cDNA clone
Xa21_454_79908 cDNA clone
Xa21_454_42026 cDNA clone

Orthologues and co-orthologues identified by INPARANOID
AT3G07650.1 Arabidopsis thaliana
AT3G07650.4 Arabidopsis thaliana
AT3G07650.2 Arabidopsis thaliana
AT3G07650.3 Arabidopsis thaliana
LOC_Os06g19444.1 Oryza sativa japonica
LOC_Os06g19444.2 Oryza sativa japonica
LOC_Os06g19444.1 Oryza sativa japonica
POPTR_0014s16870.1 Populus trichocarpa

External resources
Michigan State University - Rice Genome Annotation
Aramemnon
Gramene
PlnTFDB
MapCave
iHOP (13102.m12444)
 
Sequence: LOC_Os02g49230.6
submitter of sequence: public data
length: 1224
description: coding sequence (MSU 6.1)
LOC_Os02g49230.6
ATGGATGCTC TTTGTGATTT CTGCAGGGAG CAAAGGTCAA TGGTCTATTG CCGATCAGAT         60
GCAGCATCCT TGTGCTTGTC GTGTGATCGT AATGTGCATT CAGCCAATGC CCTTTCCCGA        120
CGCCATACAA GAACCCTTCT TTGTGATCGT TGTGTTGGAC AGCCTGCAGC AGTCCGTTGT        180
CTTGAAGAGA ACACCTCACT TTGCCAAAAC TGTGACTGGA ATGGACATGG GGCAGCATCC        240
TCAGCTGCTG GGCATAAAAG GCAGACCATA AACTGTTACT CGGGGTGCCC ATCGTCGGCA        300
GAGCTCTCGA GAATCTGGTC CTTTAGTATG GATATCCCAA CTGTAGCTGC GGAGCCAAAC        360
TGTGAGGAAG GAATAAACAT GATGAGCATT AATGACAATG ACGTCAATAA CCATTGTGGT        420
GCTCCAGAAG ATGGCCGCTT GTTGGATATA GCTAGCACAG CACTCATGAG TGATTTACCT        480
ACAGGAGACA AGTTCAAACC TTTAATAGGT TCTTCTTCAG GAGATGGGAT GAATCTTCTG        540
CCACTTAATT CAGATCAGCC AGCTGAGCCA GTTTCAACGA CGCCTAAGGC ACCCTGTGTC        600
ACAGACAAAG ATATGTTCAA TGATGGGAGC GTATATGGAG ACTTCTGTGT GGATGATGCT        660
GACCTAACAT TTGAGAATTA TGAAGAATTA TTCGGTACCT CTCACGTTCA AACAGAACAA        720
CTCTTTGATG ATGCTGGAAT TGACAGTTAT TTTGAAATGA AGGATGTGCC AGCAGATGAA        780
TCTAATGAGC AGCCCAAACC TGTGCAGCCA GAATGTAGCA ATGTCGCATC TGTTGATTCT        840
GGGATGTCAA ACCCAGCTGC AAGGGCTGAT TCCAGCCATT GTATTCCTGG TAGGCAGGCT        900
ATATCCAACA TATCCCTTTC CTTCTCTGGT TTGACTGGTG AAAGCAGTGC TGGATATTTT        960
CAAGATTGTG GGGTATCGTC AATGATCCTT ATGGGTGAGC CACCCTGGCA TCCTCCTGGT       1020
CCTGAAAGTT CATCTGCTGG AGGCAGCAGA GATAATGCTC TTACACGGTA CAAGGAGAAG       1080
AAGAAGAGAA GAAAATTTGA CAAGAAGATA AGGTATGCTT CTCGTAAGGC TAGGGCAGAT       1140
GTGAGAAAAA GGGTCAAAGG ACGGTTTGTA AAGGCTGGCG AAGCATATGA CTACGATCCG       1200
CTGAGCCAAA CAAGAAGCTA CTAA                                              1224
 
Sequence: LOC_Os02g49230.6
submitter of sequence: public data
length: 2455
description: cdna sequence (MSU 6.1)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
LOC_Os02g49230.6
GTGCTTCTCC ACCTGTTGTT CCATTTTCTC CTCGCTTATC TCTTCCTCGC TCGCTCTCCC         60
TTTCGCGCAC CAGAAAAGTC GTTTTTTAAT TTTCGAGTTT CCGTGGAAGA TTCTCGATAC        120
CTGTCCCTCG TCGTCGTCCT CCTCCGCCGG CCGCCGCCGA CGACCGCAGC AGGGGTGGAT        180
CCGGGGCGGC GCCGATTCGT ATCCTGGTAG GATCCCACTG AATTCAACTG TTGAACAAAA        240
AGCCAGGAAG GTGGCTGTTC TTGTGGCACT CAGTGCTAGT GGAAGTGCTC CAGTACTGTA        300
CAGGACCATG GATGCTCTTT GTGATTTCTG CAGGGAGCAA AGGTCAATGG TCTATTGCCG        360
ATCAGATGCA GCATCCTTGT GCTTGTCGTG TGATCGTAAT GTGCATTCAG CCAATGCCCT        420
TTCCCGACGC CATACAAGAA CCCTTCTTTG TGATCGTTGT GTTGGACAGC CTGCAGCAGT        480
CCGTTGTCTT GAAGAGAACA CCTCACTTTG CCAAAACTGT GACTGGAATG GACATGGGGC        540
AGCATCCTCA GCTGCTGGGC ATAAAAGGCA GACCATAAAC TGTTACTCGG GGTGCCCATC        600
GTCGGCAGAG CTCTCGAGAA TCTGGTCCTT TAGTATGGAT ATCCCAACTG TAGCTGCGGA        660
GCCAAACTGT GAGGAAGGAA TAAACATGAT GAGCATTAAT GACAATGACG TCAATAACCA        720
TTGTGGTGCT CCAGAAGATG GCCGCTTGTT GGATATAGCT AGCACAGCAC TCATGAGTGA        780
TTTACCTACA GGAGACAAGT TCAAACCTTT AATAGGTTCT TCTTCAGGAG ATGGGATGAA        840
TCTTCTGCCA CTTAATTCAG ATCAGCCAGC TGAGCCAGTT TCAACGACGC CTAAGGCACC        900
CTGTGTCACA GACAAAGATA TGTTCAATGA TGGGAGCGTA TATGGAGACT TCTGTGTGGA        960
TGATGCTGAC CTAACATTTG AGAATTATGA AGAATTATTC GGTACCTCTC ACGTTCAAAC       1020
AGAACAACTC TTTGATGATG CTGGAATTGA CAGTTATTTT GAAATGAAGG ATGTGCCAGC       1080
AGATGAATCT AATGAGCAGC CCAAACCTGT GCAGCCAGAA TGTAGCAATG TCGCATCTGT       1140
TGATTCTGGG ATGTCAAACC CAGCTGCAAG GGCTGATTCC AGCCATTGTA TTCCTGGTAG       1200
GCAGGCTATA TCCAACATAT CCCTTTCCTT CTCTGGTTTG ACTGGTGAAA GCAGTGCTGG       1260
ATATTTTCAA GATTGTGGGG TATCGTCAAT GATCCTTATG GGTGAGCCAC CCTGGCATCC       1320
TCCTGGTCCT GAAAGTTCAT CTGCTGGAGG CAGCAGAGAT AATGCTCTTA CACGGTACAA       1380
GGAGAAGAAG AAGAGAAGAA AATTTGACAA GAAGATAAGG TATGCTTCTC GTAAGGCTAG       1440
GGCAGATGTG AGAAAAAGGG TCAAAGGACG GTTTGTAAAG GCTGGCGAAG CATATGACTA       1500
CGATCCGCTG AGCCAAACAA GAAGCTACTA AAGCCTTTCA CTCGATTGGT TTCGTCCAGT       1560
GTTCAAGTAG CAATTTTCAG CAGCTGATTT GATGTTGGTT GCACGGCAAG CATGATCACT       1620
GGAGAACACA AGCAATTGCG GCAGACCTTG CAATTGAAAA CGGGGAAAGG AAACCAAACG       1680
CTGTGATCAA ATCAAATTAA TGAAATAAAA AAGGAAAAAA TAGGATGCAA ACATGCGAGA       1740
AGCTCATGGA TGGCTGGATC TCTAGGTAAC ATGATTAATT ATACTACTGA TGGAATTTGC       1800
ACCGCTGTAA TATTATTTAC GAATCACAAT CTGCCGTGGG ATTGTTCTTC TGTCGTGTAT       1860
GTATGTGTAT ATAGATGGAT GGCTGTTAAG AAAATATTGT GACGATTATA AAGTTTACCT       1920
TTGTAAATGA TAGTAAAATG CTGCATTGAT CTGTAGGGTG AGCATAGAGC TTTATTCAAA       1980
TTGAGACGTG ATCAAACATG CGTGCTAATT TGGTAACCTA AATTGAAATC AAATATGCAT       2040
GCAACCTAAG TAGATCACTA ACTCGATCTA GCGCGAGGCT GCTGTCTCCT CTGTCAAACT       2100
GACATGAACG GTAAATCTAG CGCGAGGTCG CCGTCCCCGG GATCCGCCGT GTCTGAGGCC       2160
AGCGTGCAAG AATCCAAGCT CGACGCGAGA GCGTCGGCGA GAGGGTGCTG CGGCGGCGGC       2220
GGCGACTCTG ACTCCGCGAC GCCGCCCTCC ATGGCCGCCG AGTCAGCGGC CGGCGGCGGG       2280
CAAGTGGCGC CCGTCTCGGC GGCGGGGACC AAGCCGCTCA GGCGGTGGTG CTTGATCCGG       2340
CAACCGACCG AGATGCGCGA GGCGCGGCCA TCGACGACCG AGCGTTGGAC GTGGCGGTGG       2400
AGGAGCATGG TCCCTTCGGC GCCGCGGGCG GCGAAGGAGT CGTGGTCGAC GGCGG            2455
 
Sequence: LOC_Os02g49230
submitter of sequence: public data
length: 5416
description: genomic sequence (MSU 6.1)
LOC_Os02g49230
GCTGCTCGTC TTCTCGTTCT CTCGCTCGCG CATCGTCTCT TGTGCTTCTC CACCTGTTGT         60
TCCATTTTCT CCTCGCTTAT CTCTTCCTCG CTCGCTCTCC CTTTCGCGCA CCAGAAAAGT        120
CGTTTTTTAA TTTTCGAGTT TCCGTGGAAG ATTCTCGATA CCTGTCCCTC GTCGTCGTCC        180
TCCTCCGCCG GCCGCCGCCG ACGACCGCAG CAGGGGTGGA TCCGGGGCGG CGCCGATTCG        240
GTGAGTCCGG TCTCGCGAGC TCGAGCTGTT TGTTTGTTTG TTTGTTTGGT GGGGATTGGA        300
TTGGGTTGGA TTTGCGTTGT GTAGGCTAGC CGCATCAGCG CCGCTTGTTT GGTGGATTTC        360
GTGAGCTGCT GCTGGATTAG GGGGCTGGGA TTGGGATTGG GAGGGGGGAT GGATCATGGA        420
TGTCGGTGGA TTGGGGGGGA TTGGGTTTGA GTGTTCGATT TCGAGTCCGC TTGATCGTTT        480
CTGTGGTGTT CCAGGGTGTT TGGTGTTGGG GAGTCTGAAC TGATTTTTTG GTTTTCTTTC        540
TTTTTGCGGA CACTTCACGC TTTCTCTCGT GTTGCGTGGA GCGTACGTGA GTGGTTTTTG        600
GTCCGGCTTT AGCTTTGAGC TGGACTTTAG CTGCTCAGAA TTTGATTATT TTTCTTTCTC        660
TAATTGGAGT ACATACAAGT ACGATGGCTT AGCATGTTTC AGTATCCAGT TCAGTTTTCA        720
ACTAGAAAAT ATTAACAATT TCATCCCCTC TGCCCTTTTG TCTACTGACA TAATAGTCGT        780
GTAGCGGCAA CTGCGGTTAG ATGCAGAAAG GAAGCCCTTT TGTATTCTTA AATTTGGATA        840
ATCTTAAAAA ACAAAATAAC ATTTCTCTTG CTTATTTGAG TGGCTCAGAA AGTTTGTTGC        900
TTTTATCCAC ACACGGCATG CTTTATATGA TCAGAGAAGT GGGGTTAGTG CTATTTAAAA        960
CTTAGGATTA GTCCCGATAA AATTGTTTGT ATTGTGGAGA TGCATGCTTG TTGATTTACA       1020
TGATTAGTGC TCAGAAAAGG TGCCCTTTTG ATATGCAAAA TAGGACATAC CAGCGTCAAA       1080
AATAAAGGGA CATAATAAAA TGAGCAACCA GGATCATTGT TGGATGCACA GCTGGTGAAG       1140
TCCTATTTGT ATTGCCGCTT CTAGCTCTTG CCCATGCATG CTAATAAGCC ATCCCATGCT       1200
GGTACGAAAA GTGACTTTTA TTAACTCAGA AATGCTATCA ACTGCAGCTA GCATTTGTTT       1260
GCTGCATAGC TCCATGTTGC TAATTTCATG TTTTTCCATT GTTATCAGAT GCATTGTACT       1320
GCTCTCTGCT AGACTTGTCT AGTGAATTGG TGTTATTGAC CCTTATTTTT TAAACATGGA       1380
TACTTTTTTC CCCCTTATAT GCTTTACAGA GAACATGCGC TTACAGGTTA CAGACTGACA       1440
GTACATAGGA TAGAAGATAA AACCGTAACA TTTACCAAGA AAAACTTCCT GCAAGTAGTT       1500
TTGTGCCCTT CTATTTCAGA GACTTTTGAG TTCTTTATGC CCTTGCTAGC AAATCTTGGG       1560
TGGGATAATA AAACTCAAAA CTCTTCACAA ATTGTTATAC GCTACCTATA TTTTAAATTG       1620
TTACTAAGTC AATGAATATA TTGATTGCTC TTGTTGTGAT ACATTTGAAA TGTTTCTGTT       1680
GGTTGCAGAG CAATTCAAGT GGTTCATTTC ATGGCCTGTA TCAATATACT TATATATCTC       1740
CAACACTTAC CAAGGAATGG AAACAAACTC ATCATGTAAC ATGGGCTGCA AAATCTGTCC       1800
CTTCTTTTCT AATTTGAAGT GTGCACATAT TTGCTATATT TTCCATTAAA AAAATATACT       1860
ACTCTCTTTC CATAATGTTC AATTATAAGT TTGTTGTTTT GTTGTTACTG ATTTTTGTTT       1920
TTGGCTTTTT GCACACCAGT ATCCTGGTAG GATCCCACTG AATTCAACTG TTGAACAAAA       1980
AGCCAGGAAG GTGGCTGTTC TTGTGGCACT CAGTGCTAGT GGAAGTGCTC CAGTACTGTA       2040
CAGGACCATG GATGCTCTTT GTGATTTCTG CAGGGAGCAA AGGTCAATGG TCTATTGCCG       2100
ATCAGATGCA GCATCCTTGT GCTTGTCGTG TGATCGTAAT GTGCATTCAG CCAATGCCCT       2160
TTCCCGACGC CATACAAGAA CCCTTCTTTG TGATCGTTGT GTTGGACAGC CTGCAGCAGT       2220
CCGTTGTCTT GAAGAGAACA CCTCACTTTG CCAAAACTGT GACTGGAATG GACATGGGGC       2280
AGCATCCTCA GCTGCTGGGC ATAAAAGGCA GACCATAAAC TGTTACTCGG GGTGCCCATC       2340
GTCGGCAGAG CTCTCGAGAA TCTGGTCCTT TAGTATGGAT ATCCCAACTG TAGCTGCGGA       2400
GCCAAACTGT GAGGAAGGAA TAAACATGAT GAGCATTAAT GACAATGACG TCAATAACCA       2460
TTGTGGTGCT CCAGAAGATG GCCGCTTGTT GGATATAGCT AGCACAGCAC TCATGAGTGA       2520
TTTACCTACA GGAGACAAGT TCAAACCTTT AATAGGTTCT TCTTCAGGAG ATGGGATGAA       2580
TCTTCTGCCA CTTAATTCAG ATCAGCCAGC TGAGCCAGTT TCAACGACGC CTAAGGTGCA       2640
TGCTTCTCAT TCCCCTCCAA AACCTATTCA AGTATTCTGC TAAGTTTCTG CATAGGTCAT       2700
AACATATTGC ATGGACATAT TATTACACCA AATGTTCACA CTGCGTGGTT GCGGTTTCGA       2760
CCATGTACTT TGTTTTGGTA TTCTTCTAGA AGTGAACGTT CGAAGGGAAA ACTTTCTGTA       2820
GTTTGACCAA TGGTACAATG ACCATCTTTT GGTCATTATT TATTACTGTT TGCTACTTTC       2880
TTAAGAGTTC CACACTGTCA AAGCTTTCCT GGTGTTTTTC TCCTGCCGAG CAAGTTACTC       2940
TTATCTTCTA ATAATTTTAC CATTGAATGT GAATTCACCT AGATCTTATA ATTCCCTAAT       3000
GATGATGGTT GAACAATTGC TGCAGTTGGA ATTTGTGTAT TTCCAATATC ATTATTCATG       3060
AAAATGTCAT CTGCGATGCC TGTCATTATG GTGTCACTGC GTGCTTATCG AAACTTGGTT       3120
GCATAATTCA GGCACCCTGT GTCACAGACA AAGATATGTT CAATGATGGG AGCGTATATG       3180
GAGACTTCTG TGTGGATGAT GCTGACCTAA CATTTGAGAA TTATGAAGAA TTATTCGGTA       3240
CCTCTCACGT TCAAACAGAA CAACTCTTTG ATGATGCTGG AATTGACAGT TATTTTGAAA       3300
TGAAGGATGT GCCAGCAGAT GAATCTAATG AGGTCCGTAC CTTTCTGCAT ATAGTCTTTT       3360
TATCTGCTGT GTTTGTTGTA GGAAAAGAGC TCTGTTTTGC TATTTCTGAC CTTCCCGCCA       3420
TAATCAGGGT TAATCTCGTT TTCCTCCATT TGTGCTTATA TCGAGTTGAC CCTACCATTT       3480
TACTGAGAAT CATTAAATGA TTGATTGGGT TAATTAGGAG TGGAATGTCT GCATATCTCA       3540
TCGTCCATTT TATGGCTATT AATTATTTTA CTAAAATTTT GGTATGACTG TTATACTTTC       3600
AGCAGCCCAA ACCTGTGCAG CCAGAATGTA GCAATGTCGC ATCTGTTGAT TCTGGGATGT       3660
CAAACCCAGC TGCAAGGGCT GATTCCAGCC ATTGTATTCC TGGTAGGCAG GCTATATCCA       3720
ACATATCCCT TTCCTTCTCT GGTTTGACTG GTGAAAGCAG TGCTGGATAT TTTCAAGATT       3780
GTGGGGTATC GTCAATGATC CTTATGGGTG AGCCACCCTG GCATCCTCCT GGTCCTGAAA       3840
GTTCATCTGC TGGAGGCAGC AGAGATAATG CTCTTACACG GTACAAGGAG AAGAAGAAGA       3900
GAAGAAAGTA AGTGCATCTT ACTGTGCTTT TTCAGTTTTT TGAAAGTAAG TTCATACTAG       3960
TACTTGATAT GCCATGGTTA AATGCATTAC AGCTAAGAAT GTGGCTGCAG TATCATTCAA       4020
TTTTCAGATT TGGAATTCTA TATTAAAAAG CTTACTGTGC CAAATCGATA TTTTCGTATA       4080
CACGTGATCA TTTTAGACAT GTGGATGCTT GCTCCTAGTG TGAATGCTAC TTTATGTTTT       4140
TCTTAAAAGA AGTTATTATA TGGCCTTTCT TCACATATTT TCTTCTTAAC AGATTTGACA       4200
AGAAGATAAG GTATGCTTCT CGTAAGGCTA GGGCAGATGT GAGAAAAAGG GTCAAAGGAC       4260
GGTTTGTAAA GGCTGGCGAA GCATATGACT ACGATCCGCT GAGCCAAACA AGAAGCTACT       4320
AAAGCCTTTC ACTCGATTGG TTTCGTCCAG TGTTCAAGTA GCAATTTTCA GCAGCTGATT       4380
TGATGTTGGT TGCACGGCAA GCATGATCAC TGGAGAACAC AAGCAATTGC GGCAGACCTT       4440
GCAATTGAAA ACGGGGAAAG GAAACCAAAC GCTGTGATCA AATCAAATTA ATGAAATAAA       4500
AAAGGAAAAA ATAGGATGCA AACATGCGAG AAGCTCATGG ATGGTAATGC TCCATTTTCT       4560
CCTGTACAGT TCATGCATCT TCAGTTGCTT CTGGTTGAGA TGTCTGAATC ACTCTCTACC       4620
ATCTGTGCAT TAATCAAATA CAAATACATG GGCCTACCGC ACGACGACGA ACGCACCTGC       4680
TTCTGTTGTG ATGTTTTGTG TTGCGGCTGT CAGGCTGGAT CTCTAGGTAA CATGATTAAT       4740
TATACTACTG ATGGAATTTG CACCGCTGTA ATATTATTTA CGAATCACAA TCTGCCGTGG       4800
GATTGTTCTT CTGTCGTGTA TGTATGTGTA TATAGATGGA TGGCTGTTAA GAAAATATTG       4860
TGACGATTAT AAAGTTTACC TTTGTAAATG ATAGTAAAAT GCTGCATTGA TCTGTAGGGT       4920
GAGCATAGAG CTTTATTCAA ATTGAGACGT GATCAAACAT GCGTGCTAAT TTGGTAACCT       4980
AAATTGAAAT CAAATATGCA TGCAACCTAA GTAGATCACT AACTCGATCT AGCGCGAGGC       5040
TGCTGTCTCC TCTGTCAAAC TGACATGAAC GGTAAATCTA GCGCGAGGTC GCCGTCCCCG       5100
GGATCCGCCG TGTCTGAGGC CAGCGTGCAA GAATCCAAGC TCGACGCGAG AGCGTCGGCG       5160
AGAGGGTGCT GCGGCGGCGG CGGCGACTCT GACTCCGCGA CGCCGCCCTC CATGGCCGCC       5220
GAGTCAGCGG CCGGCGGCGG GCAAGTGGCG CCCGTCTCGG CGGCGGGGAC CAAGCCGCTC       5280
AGGCGGTGGT GCTTGATCCG GCAACCGACC GAGATGCGCG AGGCGCGGCC ATCGACGACC       5340
GAGCGTTGGA CGTGGCGGTG GAGGAGCATG GTCCCTTCGG CGCCGCGGGC GGCGAAGGAG       5400
TCGTGGTCGA CGGCGG                                                       5416
 
Sequence: LOC_Os02g49230.6
submitter of sequence: public data
length: 408
description: amino acid sequence (MSU 6.1)
LOC_Os02g49230.6
MDALCDFCRE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVGQPAAVRC         60
LEENTSLCQN CDWNGHGAAS SAAGHKRQTI NCYSGCPSSA ELSRIWSFSM DIPTVAAEPN        120
CEEGINMMSI NDNDVNNHCG APEDGRLLDI ASTALMSDLP TGDKFKPLIG SSSGDGMNLL        180
PLNSDQPAEP VSTTPKAPCV TDKDMFNDGS VYGDFCVDDA DLTFENYEEL FGTSHVQTEQ        240
LFDDAGIDSY FEMKDVPADE SNEQPKPVQP ECSNVASVDS GMSNPAARAD SSHCIPGRQA        300
ISNISLSFSG LTGESSAGYF QDCGVSSMIL MGEPPWHPPG PESSSAGGSR DNALTRYKEK        360
KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY*                     408

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