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Gene: LOC_Os02g21660.2


  Alternative name:13102.m02428

Genotype (Genotype)
  species: Oryza sativa japonica
  name: (Japanese rice)
  type: wildtype

Gene function:
protein L1P family of ribosomal proteins domain containing protein, expressed (TIGR 6.1)

Gene Ontology
GO termIdentifierType
translationGO:0006412biological process
structural molecule activityGO:0005198molecular function
ribosomeGO:0005840cellular component
cytosolGO:0005829cellular component

Related with
HF08B21 cDNA clone
HF12K11 cDNA clone
HY05O22 cDNA clone
HD14H11 cDNA clone
HF14G04 cDNA clone
HF21O12 cDNA clone
HY06F05 cDNA clone
HF14P23 cDNA clone
HF09I15 cDNA clone
HF08P23 cDNA clone
HF12O07 cDNA clone
HF24G08 cDNA clone
HI11H12 cDNA clone
HD07E05 cDNA clone
HF24N14 cDNA clone
HM07L08 cDNA clone
HD12B12 cDNA clone
HD07F08 cDNA clone
HF11G05 cDNA clone
HB32O08 cDNA clone
HD08N05 cDNA clone
HM07L13 cDNA clone
HD08M21 cDNA clone
HF03O10 cDNA clone
HF05N24 cDNA clone
HD07L18 cDNA clone
HD08J10 cDNA clone
HD14B11 cDNA clone
HA20K17 cDNA clone
HA14I18 cDNA clone
HA20B11 cDNA clone
HA16M13 cDNA clone
HA18P15 cDNA clone
HA18D13 cDNA clone
HA03A19 cDNA clone
HS18P03 cDNA clone
HA10E03 cDNA clone
HA03H17 cDNA clone
HU03G24 cDNA clone
HA17G15 cDNA clone
HT01E24 cDNA clone
HA14M02 cDNA clone
HA10C01 cDNA clone
HX04A08 cDNA clone
HA12N17 cDNA clone
HA13B21 cDNA clone
HX03N10 cDNA clone
HM12K01 cDNA clone
HS05G07 cDNA clone
HT11L10 cDNA clone
HV05J24 cDNA clone
HV11O02 cDNA clone
HY01K11 cDNA clone
HA28G07 cDNA clone
HA22P14 cDNA clone
HA24G13 cDNA clone
HA30D04 cDNA clone
HB15D22 cDNA clone
HA23G13 cDNA clone
HA26K21 cDNA clone
HB06O15 cDNA clone
HA27P03 cDNA clone
HA26C18 cDNA clone
HB17H18 cDNA clone
HB13P06 cDNA clone
HF01C05 cDNA clone
HD03B17 cDNA clone
HD01K06 cDNA clone
MPMGp2010D01106 cDNA clone
HD03O22 cDNA clone
HD01H18 cDNA clone
HD03O02 cDNA clone
HM02C07 cDNA clone
HA06F22 cDNA clone
HD01P08 cDNA clone
HA08B01 cDNA clone
HF01M21 cDNA clone
Xa21_454_1751 cDNA clone
Xa21_454_2015 cDNA clone
Xa21_454_3230 cDNA clone
HA10L12 cDNA clone
HA02J07 cDNA clone
HH04E01 cDNA clone
HA02B23 cDNA clone
HL02A15 cDNA clone
HM05L13 cDNA clone
HA05A06 cDNA clone
GAN005E01 cDNA clone
HL01H22 cDNA clone
HD10M10 cDNA clone
HL02K21 cDNA clone
HL01P22 cDNA clone
HA02L06 cDNA clone
HM05L08 cDNA clone
HH07J03 cDNA clone
HI09I12 cDNA clone
HA02O09 cDNA clone
HW09P23 cDNA clone
HH06O05 cDNA clone
HA30K14 cDNA clone
HD03M24 cDNA clone
HO17G11 cDNA clone
MPMGp2010G15108 cDNA clone
HH03N07 cDNA clone
HH05H04 cDNA clone
GNW003K02 cDNA clone
HM11M03 cDNA clone
HF17N08 cDNA clone
MPMGp2010G21107 cDNA clone
MPMGp2010I05109 cDNA clone
MPMGp2010I21110 cDNA clone
HH01M24 cDNA clone
HH01O12 cDNA clone
HZ53H10 cDNA clone
HZ41P14 cDNA clone
HX09F08 cDNA clone
HX12F10 cDNA clone
HZ51F08 cDNA clone
HV14D22 cDNA clone
HZ45M21 cDNA clone
HZ46D20 cDNA clone
HZ39I06 cDNA clone
HX13J23 cDNA clone
HX10L13 cDNA clone
HZ41I18 cDNA clone
HX12M02 cDNA clone
Contig2777_at Affymetrix representative on Barley1
Contig1939_at Affymetrix representative on Barley1

Orthologues and co-orthologues identified by INPARANOID
AT1G08360.1 Arabidopsis thaliana
AT5G22440.1 Arabidopsis thaliana
AT5G22440.2 Arabidopsis thaliana
CRE3_195585 Chlamydomonas reinhardtii
LOC_Os01g64090.1 Oryza sativa japonica
LOC_Os02g21660.1 Oryza sativa japonica
LOC_Os08g44380.2 Oryza sativa japonica
LOC_Os08g44450.2 Oryza sativa japonica
POPTR_0007s11880.1 Populus trichocarpa
POPTR_0004s21290.1 Populus trichocarpa

External resources
Michigan State University - Rice Genome Annotation
Aramemnon
Gramene
PlnTFDB
MapCave
iHOP (13102.m02428)
 
Sequence: LOC_Os02g21660.2
submitter of sequence: public data
length: 627
description: coding sequence (MSU 6.1) 
LOC_Os02g21660.2
ATGAGTAAGT TGCAGAGTGA TGCTCTGAGA GAAGCGATCT CTCAAATTGC TAATGACTCT         60
CGTGAGAAGC AGCGCAAATT TGTGGAAACC ATTGAGCTGC AGATTGGACT GAAGAACTAT        120
GACCCTCAAA AGGATAAGCG TTTCAGTGGT TCTGTTAAGC TGCCCCACAT CCCTCGGCCT        180
AAGTTGAAGG TTTGCATGCT TGGTGATGCT CAGCACGTCG AAGAGGCAGA GAAAATGGGC        240
CTAGACTATA TGGATGTGGA AGCCCTCAAG AAAATGAACA AAAACAAGAA GCTAGTTAAG        300
AAGCTTGCAA AGAAATATCA TGCTTTCCTT GCTTCTGAGG CTATCATCAA GCAGATTCCT        360
CGACTTCTTG GTCCTGGTCT TAACAAAGCA GGCAAATTCC CAACTCTGGT GACGCATCAG        420
GAATCACTTG AGTCCAAGGT TAATGAGACT AAGGCTACAG TGAAATTCCA GCTGAAGAAG        480
GTTCTCTGCA TGGGTGTTGC TGTTGGCAAC TGTGCTATGG AGGAGAAGCA GATCTTCCAA        540
AATGTGCAGA TGAGCGTGAA CTTCCTTGTT TCCCTTTTGA AGAAGAATTG GCAGAACGTA        600
TGTGATCATG TGTTCCTTAT AGCATAG                                            627
 
Sequence: LOC_Os02g21660.2
submitter of sequence: public data
length: 1178
description: cdna sequence (MSU 6.1)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
LOC_Os02g21660.2
AGGGTTTCCT CTCCGCCGCG CCGCCTCCCT CGTACCTCGT CGCGGATCTG TGCTCGCACC         60
ACCGGCGGCG CCATGAGTAA GTTGCAGAGT GATGCTCTGA GAGAAGCGAT CTCTCAAATT        120
GCTAATGACT CTCGTGAGAA GCAGCGCAAA TTTGTGGAAA CCATTGAGCT GCAGATTGGA        180
CTGAAGAACT ATGACCCTCA AAAGGATAAG CGTTTCAGTG GTTCTGTTAA GCTGCCCCAC        240
ATCCCTCGGC CTAAGTTGAA GGTTTGCATG CTTGGTGATG CTCAGCACGT CGAAGAGGCA        300
GAGAAAATGG GCCTAGACTA TATGGATGTG GAAGCCCTCA AGAAAATGAA CAAAAACAAG        360
AAGCTAGTTA AGAAGCTTGC AAAGAAATAT CATGCTTTCC TTGCTTCTGA GGCTATCATC        420
AAGCAGATTC CTCGACTTCT TGGTCCTGGT CTTAACAAAG CAGGCAAATT CCCAACTCTG        480
GTGACGCATC AGGAATCACT TGAGTCCAAG GTTAATGAGA CTAAGGCTAC AGTGAAATTC        540
CAGCTGAAGA AGGTTCTCTG CATGGGTGTT GCTGTTGGCA ACTGTGCTAT GGAGGAGAAG        600
CAGATCTTCC AAAATGTGCA GATGAGCGTG AACTTCCTTG TTTCCCTTTT GAAGAAGAAT        660
TGGCAGAACG TATGTGATCA TGTGTTCCTT ATAGCATAGA TACAAAATTT ATCTGCCACT        720
TGGACATCAG CCTAGTTATT CTGATGATTT GACATGTTAT TTGTATCATC GTGCAGGTTA        780
GGTGCTTGTA CCTGAAGAGC ACCATGGGAA AGGTGTACCG AGTGTTCTAA GTTATTTTCT        840
TTAGGCTTCT AGATGTTTTG GAGACTAAGC TACTTGAAAC TTTTGCTACT TTCCCAGTCA        900
TCAAATTTTG TGCAACAGCT GAGGATTAAG GAATTCGGAT TTAATTGTCC TGTACTAAGT        960
TGCCTCTCTC TTTGGTTGAA CATCATTACA TTTTATCCAT CGAGATCATT CTGTGATGAC       1020
CCAAAATCCT GCTGTGCAGA CCTTTTATTG TCCTGATCTT TATTAGTCTT AGCAGCATGA       1080
GTTAGTGAGA ACATTAGGTG CTCATATCTT TCTTGCCTGT TTGTTAAAGA AAATTATTGG       1140
ATGCACACAT CACAATGGAA TTTTAGAGAT ACCGATAC                               1178
 
Sequence: LOC_Os02g21660
submitter of sequence: public data
length: 3012
description: genomic sequence (MSU 6.1) 
LOC_Os02g21660
AGGGTTTCCT CTCCGCCGCG CCGCCTCCCT CGTACCTCGT CGCGGTAAGC TGCCCTGCGC         60
CCCGCTTCCT GTCTCCTTTC TCTCTCGTAC TCGATGGTGG CGCTTGCTCC TTTCGTCTCA        120
TCCTGCCTTC TTCTCCCTCT CGCTGTGCAG GATCTGTGCT CGCACCACCG GCGGCGCCAT        180
GAGGTACGGA TTTCACTTGT TCACAGTTTC TCAGTGTTCG TTCTGCCCAT TCGTAGTTGC        240
CTGACTAGGC GCCGCATTTG CCTGCGGAGC TGCGCCGCCG CGAATTGGGG GTAAAAAAAA        300
ATCTGGGGAT TTAGGTAGGA AGAGCGGCCT CGGCAAATGT AGGAGCGTTG GATCTAGGCG        360
GGTTGATTGA ACTACATGCC AGATTTGGCC GGCTGCACCG CGGATTGCGG CGTTGGTCGT        420
GGGTGTGGGG TGGTGGGAAA TGATTTTCGA TGCTGCATCA CCTGCGGGCA ACAACCATAG        480
AAGACCATCG GGAGGTGGTC GCGTTGATAG TGTCGAAGAG GCTGGGTTCT AGGATCCTGA        540
TATTTTCCAC ATTGTGATGA AGTGTTAGGG TATGTTGATC TCCCTAATGG TGGGATTAGG        600
TTTTTCTCCG CCTACTCACA TCTAGTGCAG CTCTCAGCCA TGGAGCTTGT TCCTTATGTC        660
TGGTGGTCTA GCTAACAGGA TTGTGATTGC GCCGTTTTAT GTCATGTATT TTCTTAAATA        720
TTTTGATGAA GCTCTTATTT TAACTGTAAG ATGGCCTTTT GTCATTGTTT GGGCTAAACC        780
GTGGCAATGC CAGCTAACCT GTATAGCTTC AGTAGATGCT GGATTTGTTG TTCCATACTT        840
GTAGTTAGCT GTTGGCTGCA TTATCTTATA GAAATGCTTG AAAGGGAACT TGTTGTATTT        900
GATTTTTGCA ATTCTATGCT CTTGTAAGAA AAAGATCTAT CTCTTGTAGT GAACAATTCA        960
CAATAATAGA CTCCTCACAT GTTCATTAAT GCCAAACTTA TTATTGTCTA CTGTTGCAGT       1020
AAGTTGCAGA GTGATGCTCT GAGAGAAGCG ATCTCTCAAA TTGCTAATGA CTCTCGTGAG       1080
AAGCAGCGCA AATTTGTGGA AACCATTGAG CTGCAGATTG GACTGAAGAA CTATGACCCT       1140
CAAAAGGATA AGCGTTTCAG TGGTTCTGTT AAGCTGCCCC ACATCCCTCG GCCTAAGTTG       1200
AAGGTTTGCA TGCTTGGTGA TGCTCAGCAC GTCGAAGAGG TATGTTATGC TTCTACTGAT       1260
TTTGCATTGA CTTGGTTTTG ATATGAGATG TGGAGAGAAC TTTTATCGCA ATTGGGTAGT       1320
TACTACTACG TATTTAGCAA ATGAATGCGT GTTTTGCTGT GTGATCTCTG CTGTTTTGCA       1380
ATTATTTCTT TCTTTAGTTA AAACTAAATT CTCCTTAACC ATTATAGCCA AAGGTTCTAC       1440
TGCATTGACT GTGTTTTGTC TCAATGATAA AACAAATATT TGTACTCTTG GATACTGTAT       1500
TATAATCTTT GTTCTGTGTA AATGTGTGTC TATTCTATTG TCAAAATGAT AGATATTGAA       1560
TGCTCAATCA TTATACCTTG CTTCCAAAAT CCCAAACGTA AAAGTTTTAT CATTGATTCC       1620
ACTTGATGGC ATATGGAAAT TTGTATTCTT GAGTGTAGTG CTCATTCATC GGACTATTAA       1680
TGTCTGGCTG ATAATTCTAT ATGCTACAAT TTTGGGTCTG CAGGCAGAGA AAATGGGCCT       1740
AGACTATATG GATGTGGAAG CCCTCAAGAA AATGAACAAA AACAAGAAGC TAGTTAAGAA       1800
GCTTGCAAAG AAATATCATG CTTTCCTTGC TTCTGAGGCT ATCATCAAGC AGATTCCTCG       1860
ACTTCTTGGT CCTGGTCTTA ACAAAGCAGG CAAGTGGCTT TTTCCTTATT CCATCTTTTC       1920
CACTTGGTTT CAGTGGTTGT ATATAGCTGT TATTAACTAG TTGAGTGGTT TCAGTGCCTT       1980
TTCTGTTGAG TTAACAGTTA TAAACTGGTA GCTAGGAAGT TCCAGTGTCA AGAATTTTTA       2040
CTTGATTATC AAGATTTTTT CAACCCTTTT CACAGAATCA TGCTCTGCTG GTACAGAAGT       2100
TCTTTGTTAT TTATTCCTTG GAAACATAAA CTCCATATCA ACCAAGATTT TAGCTTACGA       2160
ACTTATTGTT TATACTGTAT AGAGCTTATG ATAACATGAG CTATGCATTG ATACTACCCT       2220
GCGGTAGGTG CTAGCAATTG ATTCTATTAT TTCCTGCCCA TGTTTGTTCA TATGCCCTTG       2280
CATTTATCGA CTGCAGGCAA ATTCCCAACT CTGGTGACGC ATCAGGAATC ACTTGAGTCC       2340
AAGGTTAATG AGACTAAGGC TACAGTGAAA TTCCAGCTGA AGAAGGTTCT CTGCATGGGT       2400
GTTGCTGTTG GCAACTGTGC TATGGAGGAG AAGCAGATCT TCCAAAATGT GCAGATGAGC       2460
GTGAACTTCC TTGTTTCCCT TTTGAAGAAG AATTGGCAGA ACGTATGTGA TCATGTGTTC       2520
CTTATAGCAT AGATACAAAA TTTATCTGCC ACTTGGACAT CAGCCTAGTT ATTCTGATGA       2580
TTTGACATGT TATTTGTATC ATCGTGCAGG TTAGGTGCTT GTACCTGAAG AGCACCATGG       2640
GAAAGGTGTA CCGAGTGTTC TAAGTTATTT TCTTTAGGCT TCTAGATGTT TTGGAGACTA       2700
AGCTACTTGA AACTTTTGCT ACTTTCCCAG TCATCAAATT TTGTGCAACA GCTGAGGATT       2760
AAGGAATTCG GATTTAATTG TCCTGTACTA AGTTGCCTCT CTCTTTGGTT GAACATCATT       2820
ACATTTTATC CATCGAGATC ATTCTGTGAT GACCCAAAAT CCTGCTGTGC AGACCTTTTA       2880
TTGTCCTGAT CTTTATTAGT CTTAGCAGCA TGAGTTAGTG AGAACATTAG GTGCTCATAT       2940
CTTTCTTGCC TGTTTGTTAA AGAAAATTAT TGGATGCACA CATCACAATG GAATTTTAGA       3000
GATACCGATA CA                                                           3012
 
Sequence: LOC_Os02g21660.2
submitter of sequence: public data
length: 209
description: amino acid sequence (MSU 6.1) 
LOC_Os02g21660.2
MSKLQSDALR EAISQIANDS REKQRKFVET IELQIGLKNY DPQKDKRFSG SVKLPHIPRP         60
KLKVCMLGDA QHVEEAEKMG LDYMDVEALK KMNKNKKLVK KLAKKYHAFL ASEAIIKQIP        120
RLLGPGLNKA GKFPTLVTHQ ESLESKVNET KATVKFQLKK VLCMGVAVGN CAMEEKQIFQ        180
NVQMSVNFLV SLLKKNWQNV CDHVFLIA*                                          209
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