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Gene: LOC_Os08g44450.3


  Alternative name:LOC_Os08g44450
  Alternative name:12008.m26791

Genotype (Genotype)
  species: Oryza sativa japonica
  name: (Japanese rice)
  type: wildtype

Gene function:
60S ribosomal protein L10a-1, putative, expressed (TIGR 5.0)

Gene Ontology
GO termIdentifierType
translationGO:0006412biological process
structural molecule activityGO:0005198molecular function
ribosomeGO:0005840cellular component
cytosolGO:0005829cellular component

Related with
HY05O22 cDNA clone
HY01K11 cDNA clone
HY06F05 cDNA clone
HW09P23 cDNA clone
HD01H18 cDNA clone
HX03N10 cDNA clone
HD01K06 cDNA clone
HX04A08 cDNA clone
HD01P08 cDNA clone
HT01E24 cDNA clone
HU03G24 cDNA clone
HF01C05 cDNA clone
HD03B17 cDNA clone
HA02J07 cDNA clone
HA02L06 cDNA clone
HA02B23 cDNA clone
HF01M21 cDNA clone
HA02O09 cDNA clone
HA09J19 cDNA clone
HD03M24 cDNA clone
HD03O22 cDNA clone
HA08B01 cDNA clone
HA06F22 cDNA clone
HM02C07 cDNA clone
HA20B11 cDNA clone
HA03H17 cDNA clone
HB15D22 cDNA clone
HA27J15 cDNA clone
HA22P14 cDNA clone
HA27P03 cDNA clone
HA10E03 cDNA clone
HB32O08 cDNA clone
HD08J10 cDNA clone
HA10L12 cDNA clone
HA14M02 cDNA clone
HD08M21 cDNA clone
HD08N05 cDNA clone
HA12N17 cDNA clone
HD10E23 cDNA clone
HA26K21 cDNA clone
HD10M10 cDNA clone
HI09I12 cDNA clone
HM05L08 cDNA clone
HM05L13 cDNA clone
HD14H11 cDNA clone
HF14G04 cDNA clone
HF03O10 cDNA clone
HF11G05 cDNA clone
HM07L08 cDNA clone
HM07L13 cDNA clone
HM11M03 cDNA clone
HF12O07 cDNA clone
HI11H12 cDNA clone
HF16A08 cDNA clone
HX10E12 cDNA clone
HX12F10 cDNA clone
HV05J24 cDNA clone
HZ39I06 cDNA clone
HX12M02 cDNA clone
HX10L13 cDNA clone
HX09F08 cDNA clone
HS18P03 cDNA clone
HL02K21 cDNA clone
HH01O12 cDNA clone
HZ51F08 cDNA clone
HH07J03 cDNA clone
HH03N07 cDNA clone
HH05H04 cDNA clone
HL01P22 cDNA clone
HZ53H10 cDNA clone
HO17G11 cDNA clone
GAN005E01 cDNA clone
GNW003K02 cDNA clone
MPMGp2010I05109 cDNA clone

External resources
Michigan State University - Rice Genome Annotation
Aramemnon
Gramene
PlnTFDB
MapCave
iHOP (LOC_Os08g44450)
iHOP (12008.m26791)
 
Sequence: LOC_Os08g44450.3
submitter of sequence: public data
length: 402
description: coding sequence (TIGR 5.0)
LOC_Os08g44450.3
ATGGATGTTG AGGCTCTTAA GAAAATGAAC AAGAACAAGA AGCTGGTTAA GAAGCTTGCC         60
AAGAAGTACC ATGCTTTCTT AGCATCAGAG GCCATCATCA AGCAGATTCC TCGTCTCCTT        120
GGTCCTGGTC TCAACAAGGC AGGCAAGTTC CCTACATTGG TTACTCACCA GGAGTCTCTT        180
GAATCCAAGG TCAACGAGAC GAAAGCTACA GTCAAGTTCC AGCTGAAGAA GGTTCTGTGC        240
ATGGGTGTTG CTGTGGGTAA CTTGTCAATG GAGGAGAAGC AGATCCAGCA AAACATCCAA        300
ATGAGCGTCA ACTTCCTCGT GTCCCTTTTG AAAAAGAACT GGCAGAATGT GAGGTGCCTT        360
TACATCAAGA GCACCATGGG GAAACCAATC AGGGTGTTCT AA                           402
 
Sequence: LOC_Os08g44450.3
submitter of sequence: public data
length: 1276
description: cdna sequence (TIGR 5.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
LOC_Os08g44450.3
GTAAGATTAT GATGCCATAC CCATTTTGAT TTTGTAAATT TGTACACCCT CCGTTTAGAT         60
TGAAATTGAG GATTTTCCTT TCTCACTCAT GTAAGTGACC TTAGATTATT TAAGTCTTTG        120
TTTTACATTC TTGTAGTATC TTAACTGAAA CATATTTCAT ATTTTTAATT TGTTTGGTTG        180
AATTATTATT TGTGCCTTGC CTGATATATT GTCTGGGTCC TTCTCCATTG CATCTCAAGT        240
GTTGTATGCT ATGTATAATT GGCTGGAGTC TGAAATTAAG AATGTTCACA CGTTGTTTGT        300
GGATCAATTT ATTCTGTCTA ATGAGAATTT ATTTATCTGC CAACTTGCTG CGGATTGGCT        360
CGTGTGCAGG CTGAGAAGAT TGGGCTTGAC TACATGGATG TTGAGGCTCT TAAGAAAATG        420
AACAAGAACA AGAAGCTGGT TAAGAAGCTT GCCAAGAAGT ACCATGCTTT CTTAGCATCA        480
GAGGCCATCA TCAAGCAGAT TCCTCGTCTC CTTGGTCCTG GTCTCAACAA GGCAGGCAAG        540
TTCCCTACAT TGGTTACTCA CCAGGAGTCT CTTGAATCCA AGGTCAACGA GACGAAAGCT        600
ACAGTCAAGT TCCAGCTGAA GAAGGTTCTG TGCATGGGTG TTGCTGTGGG TAACTTGTCA        660
ATGGAGGAGA AGCAGATCCA GCAAAACATC CAAATGAGCG TCAACTTCCT CGTGTCCCTT        720
TTGAAAAAGA ACTGGCAGAA TGTGAGGTGC CTTTACATCA AGAGCACCAT GGGGAAACCA        780
ATCAGGGTGT TCTAAGTTGG TGTGTTCCAC CTAGAAGTGA AAAGGATCAG TTGAAACCAA        840
GCTTTTCCTC TTAAAATAGA CCTGTCGCTC TGGGACCGGC TTTTGTCTGT CAGTGCAAGA        900
GAATATATCA AAGAAATATC TGGACCTTAT TTTTGTAGCG TGTTTATTTG GGAGTAACTT        960
ATTCTACGTA AGCTTCTAAT GTGGAAATTC TATGTGTGTT ATGCTGCTCC TACATACTCC       1020
CTCCGTTTCG GAATGTTTGA CGCCGTTGAC TTTTTATTAC ATGTTTGACC GTTCGTCTTA       1080
TTCAAAAAAT TTTGACACTT AATAATTCTT TTCCTATCAT TTGATTCATT GTTAAATATA       1140
TTTTCATGTA GGCATATAAT TTTACATATT TCATAAAAGT TTTTGAATAA GACGAACAGT       1200
CAAACATGTG CTAAAAAGTC AACGGTGTCA AATATTTCGA AACGGAGGGA GTATAAGCCT       1260
TTTTACCTTG CAAGAT                                                       1276
 
Sequence: LOC_Os08g44450
submitter of sequence: public data
length: 2544
description: genomic sequence (TIGR 5.0)
LOC_Os08g44450
TCACTCGCCG CCTTCTCTCC TCTCGCGCCG TTTCGCTCCC TGACCCTCCG CCGCCGCCGC         60
CGCCGATCAT CATGAGGTGA TTCCCGCCGC CCAATCTCTA CTTCCCTTCT TACGGTTAAC        120
GAATCTCTTC TATTGCTTAG TTTCTGTCGC TATGGCCTTC TGTGATTCTG CGCGCTTGCT        180
TTGTTAGATC AAAGCTCTTA TTAAGATGTA AGAAGATGAT ATGGAATTCG GACGATTTGT        240
TTAGTTTATG TCTCATTAAA GCGATGGATC TCGAGATAGA CTGGGATCAC GTAGCTGTAC        300
ACCTTGCATG ATCTAGAGTT TTCTGCTTCT CGCTAGAGAT CAGTGGCGCT AGCTAGATTA        360
TGTCTGAATA TAGGTTACTG ATCGGTATAA GAAATGCTCG TTCTTTGTTT CCTGAACAAA        420
ATTCACGTGC TGAGCTTGCG TGATCAATTG CAGTAAGTTG CAGAGCGAGG TTCTCAAGGA        480
AGCCATCTCC CAGGTTGTTG GGGAATCCAA GGAGAAGGGC AGGAAGTTCA CCGAGACCGT        540
TGAGCTTCAG ATTGGTCTCA AGAACTATGA CCCGCAAAAG GACAAGCGTT TCAGCGGCTC        600
CGTCAAGCTG CCCCATATCC CCCGCCCCAA GATGAAGGTC TGCATGCTTG GTGATGCCCA        660
GCATGTCGAG GAGGTAAGAT TATGATGCCA TACCCATTTT GATTTTGTAA ATTTGTACAC        720
CCTCCGTTTA GATTGAAATT GAGGATTTTC CTTTCTCACT CATGTAAGTG ACCTTAGATT        780
ATTTAAGTCT TTGTTTTACA TTCTTGTAGT ATCTTAACTG AAACATATTT CATATTTTTA        840
ATTTGTTTGG TTGAATTATT ATTTGTGCCT TGCCTGATAT ATTGTCTGGG TCCTTCTCCA        900
TTGCATCTCA AGTGTTGTAT GCTATGTATA ATTGGCTGGA GTCTGAAATT AAGAATGTTC        960
ACACGTTGTT TGTGGATCAA TTTATTCTGT CTAATGAGAA TTTATTTATC TGCCAACTTG       1020
CTGCGGATTG GCTCGTGTGC AGGCTGAGAA GATTGGGCTT GACTACATGG ATGTTGAGGC       1080
TCTTAAGAAA ATGAACAAGA ACAAGAAGCT GGTTAAGAAG CTTGCCAAGA AGTACCATGC       1140
TTTCTTAGCA TCAGAGGCCA TCATCAAGCA GATTCCTCGT CTCCTTGGTC CTGGTCTCAA       1200
CAAGGCAGGC AAGTATTCCA TTTTCTGACA TTCTTGCTTT TTCTTGGTGT AGTTCTGAAT       1260
TTTAACGAGT GCATGCTAGT TTTTCTTGGT GTAGTTTTGA ATTCTAATGA GTACATGCTA       1320
GTTTTTCTTG GTGTAGTTAT GAATTCTAAC GTGCACAGTA TTGTTTCATA TGCCTCACTG       1380
CTACCTGAAT AGTACTACAA ATTTATAGTT GACCTGCAGT GAAACATAAC TATCATCTAG       1440
GTGTTACATT GTATTTCATT TTTCATGGCG TTGTCTTTTT ATGCTAATTT CATGCCAACT       1500
GTTAACTGTT GTAGGACCTA AACTGTCCAA TTGGACCTTA ATCTAGTAAC TGTGTGAAGT       1560
TTACCCATAT GTTTTTTTAG ACTCTGGCTA GTTGGGGTTT ACCAAGGCAG ATTGGTTAAT       1620
TGAATCATTT TGATCACACT GCAGGCAAGT TCCCTACATT GGTTACTCAC CAGGAGTCTC       1680
TTGAATCCAA GGTCAACGAG ACGAAAGCTA CAGTCAAGTT CCAGCTGAAG AAGGTTCTGT       1740
GCATGGGTGT TGCTGTGGGT AACTTGTCAA TGGAGGAGAA GCAGATCCAG CAAAACATCC       1800
AAATGAGCGT CAACTTCCTC GTGTCCCTTT TGAAAAAGAA CTGGCAGAAT GTGAGTTATC       1860
TGTTCTGAGC CTGTTTGCAT GCAATTAAAC TTACAGCTCA AATCTGTTTA ACAACATAGT       1920
GAATATATAT GAGTTTTGGC CTTGCTTTGA ATAATAGTTT TATGTGAGAA AACAACTGAT       1980
GATAACTTGG AATTGTTTGT GTTTGATAGG TGAGGTGCCT TTACATCAAG AGCACCATGG       2040
GGAAACCAAT CAGGGTGTTC TAAGTTGGTG TGTTCCACCT AGAAGTGAAA AGGATCAGTT       2100
GAAACCAAGC TTTTCCTCTT AAAATAGACC TGTCGCTCTG GGACCGGCTT TTGTCTGTCA       2160
GTGCAAGAGA ATATATCAAA GAAATATCTG GACCTTATTT TTGTAGCGTG TTTATTTGGG       2220
AGTAACTTAT TCTACGTAAG CTTCTAATGT GGAAATTCTA TGTGTGTTAT GCTGCTCCTA       2280
CATACTCCCT CCGTTTCGGA ATGTTTGACG CCGTTGACTT TTTATTACAT GTTTGACCGT       2340
TCGTCTTATT CAAAAAATTT TGACACTTAA TAATTCTTTT CCTATCATTT GATTCATTGT       2400
TAAATATATT TTCATGTAGG CATATAATTT TACATATTTC ATAAAAGTTT TTGAATAAGA       2460
CGAACAGTCA AACATGTGCT AAAAAGTCAA CGGTGTCAAA TATTTCGAAA CGGAGGGAGT       2520
ATAAGCCTTT TTACCTTGCA AGAT                                              2544
 
Sequence: LOC_Os08g44450.3
submitter of sequence: public data
length: 133
description: amino acid sequence (TIGR 5.0)
LOC_Os08g44450.3
MDVEALKKMN KNKKLVKKLA KKYHAFLASE AIIKQIPRLL GPGLNKAGKF PTLVTHQESL         60
ESKVNETKAT VKFQLKKVLC MGVAVGNLSM EEKQIQQNIQ MSVNFLVSLL KKNWQNVRCL        120
YIKSTMGKPI RVF                                                           133

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