GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT2G44840.1

  Alternative name:ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13
  Alternative name:EREBP
  Alternative name:ATERF13
  Alternative name:AT2G44840

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

ATERF13/EREBP (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13); DNA binding / transcription factor (TAIR 7.0)

ATERF13/EREBP (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. Identical to Ethylene-responsive transcription factor 13 (Ethylene-responsive element-binding factor 13) (EREBP-13) (AtERF13) (ERF13) [Arabidopsis Thaliana] (GB:Q8L9K1;GB:O22167); similar to ATERF-2/ATERF2/ERF2 (ETHYLENE RESPONSE FACTOR 2), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT5G47220.1); similar to Ethylene-responsive transcription factor 2 (Ethylene-responsive element-binding factor 2) (EREBP-2) (NsERF2) (GB:Q9LW50); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) (MapMan)

Gene Ontology

GO term	Identifier	Type
response to chitin	GO:0010200	biological process
ethylene mediated signaling pathway	GO:0009873	biological process
regulation of transcription, DNA-dependent	GO:0006355	biological process
DNA binding	GO:0003677	molecular function
transcription factor activity	GO:0003700	molecular function
nucleus	GO:0005634	cellular component

MapMan Annotation:
BIN 17.5.2:	hormone metabolism.ethylene.signal transduction
BIN 17.5:	hormone metabolism.ethylene
BIN 17:	hormone metabolism

Related with

MPIZp768A093Q	cDNA clone
MPIZp768G083Q	cDNA clone
MPIZp768M073Q	cDNA clone
MPIZp768A227Q	cDNA clone
REGIo476G048D	cDNA clone
MSU_p955B0523	cDNA clone
MPIZp768I061Q	cDNA clone
724B09	T-DNA Line
121A12	T-DNA Line
533G01	T-DNA Line
MPIZp768P133Q	cDNA clone
266821_at	Affymetrix representative on ATH1-121501

In vitro kinase assay on protein microarray

The recombinant protein expressed by this clone is an in vitro substrate for the protein kinase(s):

AT4G11330.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT1G10210.2	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT3G45640.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT1G10210.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804

External resources

Arabidopsis eFP browser

Sequence: AT2G44840.1

submitter of sequence:	public data
length:	227
description:	amino acid sequence (TAIR 7.0)

AT2G44840.1
MSSSDSVNNG VNSRMYFRNP SFSNVILNDN WSDLPLSVDD SQDMAIYNTL RDAVSSGWTP         60
SVPPVTSPAE ENKPPATKAS GSHAPRQKGM QYRGVRRRPW GKFAAEIRDP KKNGARVWLG        120
TYETPEDAAV AYDRAAFQLR GSKAKLNFPH LIGSCKYEPV RIRPRRRSPE PSVSDQLTSE        180
QKRESHVDDG ESSLVVPELD FTVDQFYFDG SLLMDQSECS YSDNRI*                      227

Sequence: AT2G44840.1

submitter of sequence:	public data
length:	932
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT2G44840.1
ACTTCATTAG TCTCCAAGAA GAAAACATCT CTCACTCTCT AAAATACACA CTCTCATCAA         60
AAACCTTCTC TTCGGTTCAG AAGCATTCAA GAATCCATTA TGAGCTCATC TGATTCCGTT        120
AATAACGGCG TTAACTCACG GATGTACTTC CGTAACCCGA GTTTCAGCAA CGTTATCTTA        180
AACGATAACT GGAGCGACTT GCCGTTAAGT GTCGACGATT CTCAAGACAT GGCTATTTAC        240
AACACTCTCC GTGATGCCGT TAGCTCCGGC TGGACACCCT CCGTTCCTCC CGTTACCTCT        300
CCGGCGGAGG AAAATAAGCC TCCGGCGACG AAGGCGAGTG GCTCACACGC GCCGAGGCAG        360
AAGGGGATGC AGTACAGAGG AGTGAGGAGG AGGCCGTGGG GGAAATTCGC GGCGGAGATT        420
AGGGATCCGA AGAAGAACGG AGCTAGGGTT TGGCTCGGGA CTTACGAGAC GCCGGAGGAC        480
GCGGCGGTGG CGTACGACCG AGCGGCGTTT CAGCTCAGAG GATCGAAAGC TAAGCTGAAT        540
TTTCCGCATT TGATTGGTTC TTGTAAGTAT GAGCCGGTTA GGATTAGGCC TCGCCGTCGC        600
TCGCCGGAAC CGTCAGTCTC CGATCAGTTA ACGTCGGAGC AGAAGAGGGA AAGCCACGTG        660
GATGACGGCG AGTCTAGTTT GGTTGTACCG GAGTTGGATT TCACGGTGGA TCAGTTTTAC        720
TTCGATGGTA GTTTATTAAT GGACCAATCA GAATGTTCTT ATTCTGATAA TCGGATATAA        780
TTAGTTTTAA GATTAAGCAA AATTTGTCCA ACGAGTTTTG CTGTATGAAA TATCTATCGA        840
TGACTCAACA GGTTTTGATC ATGATCATAT GTAATGTGAT GGAAATTAAA TATTGACGTT        900
TGTTTTTTTC TTCTAAATTC GGTTCCATAG TA                                      932

	SNP	left flanking [allel] right flanking
	SNP129220	GGCGGAGGAA[A/A]ATAAGCCTCC
	SNP129221	AAGAGGGAAA[G/G]CCACGTGGAT

Sequence: AT2G44840.1

submitter of sequence:	public data
length:	681
description:	coding sequence (TAIR 7.0)

AT2G44840.1
ATGAGCTCAT CTGATTCCGT TAATAACGGC GTTAACTCAC GGATGTACTT CCGTAACCCG         60
AGTTTCAGCA ACGTTATCTT AAACGATAAC TGGAGCGACT TGCCGTTAAG TGTCGACGAT        120
TCTCAAGACA TGGCTATTTA CAACACTCTC CGTGATGCCG TTAGCTCCGG CTGGACACCC        180
TCCGTTCCTC CCGTTACCTC TCCGGCGGAG GAAAATAAGC CTCCGGCGAC GAAGGCGAGT        240
GGCTCACACG CGCCGAGGCA GAAGGGGATG CAGTACAGAG GAGTGAGGAG GAGGCCGTGG        300
GGGAAATTCG CGGCGGAGAT TAGGGATCCG AAGAAGAACG GAGCTAGGGT TTGGCTCGGG        360
ACTTACGAGA CGCCGGAGGA CGCGGCGGTG GCGTACGACC GAGCGGCGTT TCAGCTCAGA        420
GGATCGAAAG CTAAGCTGAA TTTTCCGCAT TTGATTGGTT CTTGTAAGTA TGAGCCGGTT        480
AGGATTAGGC CTCGCCGTCG CTCGCCGGAA CCGTCAGTCT CCGATCAGTT AACGTCGGAG        540
CAGAAGAGGG AAAGCCACGT GGATGACGGC GAGTCTAGTT TGGTTGTACC GGAGTTGGAT        600
TTCACGGTGG ATCAGTTTTA CTTCGATGGT AGTTTATTAA TGGACCAATC AGAATGTTCT        660
TATTCTGATA ATCGGATATA A                                                  681

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