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Gene: POPTR_0008s23260.1


  Alternative name:estExt_Genewise1_v1.C_770152
  Alternative name:Pt-RAP2.4

Genotype (Genotype)
  species: Populus trichocarpa
  cultivar: unknown

Gene function:
similar to AP2 domain transcription factor RAP2.3 (Related to AP2 protein 3) (Cadmium-induced protein AS30).; [ co-ortholog (2of2) of At3g16770, ] (phytozome 2.0)

Orthologues and co-orthologues identified by INPARANOID
AT3G16770.1 Arabidopsis thaliana

External resources
Phytozome Gene Page
Popgenie
eFP Browser

 
Sequence: POPTR_0008s23260.1
submitter of sequence: public data
length: 768
description: coding sequence (phytozome 2.0) 
POPTR_0008s23260.1
ATGTGTGGAG GTGCCATTAT TTCCGATTTT GTTACTGTTA AGCGTGGCCG GAGATTGACA         60
GTTGAGGATC TCTGGTCTGA ACTTGACCCC TTCTCTGAAT TTCTTAGATT TGATTATCAC        120
TCTAATGATA ATAATGGTAG TAAAAAAGAC CCATCAAATC TCTTGTTCCC TCAGAAGCCA        180
AGCTACACCA TCCAAGTCCA GCAAGTGATA ACAGAGAAAG TTGAGAAGCC AAGCCATGCC        240
ACAGAGAAAG AAAATGGTAA CAAGAAGGCT CAAAGAACCA GAAAGAGTGT GTATAGAGGA        300
ATAAGGCAAA GGACATGGGG CAAATGGGCA GCTGAAATAA GAGACCCACA CAAAGGTGCT        360
AGAGTTTGGC TTGGCACATA CAACACCGCT GAGGAAGCCG CCAAAGCATA TGATGAAGCC        420
GCTAAACGCA TCCGTGGTGA TAAAGCCAAG CTCAACTTCC CTTCTCAGAC ACCGCCAACT        480
CCGGAGGCGC CACCACCTGC CAAGAAGCGT TGCATCGTGG CTCCTGAAAC AGCTTATGTG        540
GCTAGTCCTT TCACACCACC GCTGCAAGAG CCATATTCTG GGTATCAAAA TGAAGATTAT        600
GAGCTGGAAG AGCAAATCTT GAAGTTGGAG TCGTTTCTTG GGCTGGAACC TGACCAGATG        660
GCTGCTCGTC TGAGGGAAAA CGGCGGTGAT AATCGTGACT CTGGGGACCT TTGGATGCTT        720
GATGATCTTG TGACACATCA TCAGTATCGA CGTCAGATTA ATTATTAG                     768
 
Sequence: POPTR_0008s23260.1
submitter of sequence: public data
length: 1007
description: cdna sequence (phytozome 2.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
POPTR_0008s23260.1
CATGTGTGGA GGTGCCATTA TTTCCGATTT TGTTACTGTT AAGCGTGGCC GGAGATTGAC         60
AGTTGAGGAT CTCTGGTCTG AACTTGACCC CTTCTCTGAA TTTCTTAGAT TTGATTATCA        120
CTCTAATGAT AATAATGGTA GTAAAAAAGA CCCATCAAAT CTCTTGTTCC CTCAGAAGCC        180
AAGCTACACC ATCCAAGTCC AGCAAGTGAT AACAGAGAAA GTTGAGAAGC CAAGCCATGC        240
CACAGAGAAA GAAAATGGTA ACAAGAAGGC TCAAAGAACC AGAAAGAGTG TGTATAGAGG        300
AATAAGGCAA AGGACATGGG GCAAATGGGC AGCTGAAATA AGAGACCCAC ACAAAGGTGC        360
TAGAGTTTGG CTTGGCACAT ACAACACCGC TGAGGAAGCC GCCAAAGCAT ATGATGAAGC        420
CGCTAAACGC ATCCGTGGTG ATAAAGCCAA GCTCAACTTC CCTTCTCAGA CACCGCCAAC        480
TCCGGAGGCG CCACCACCTG CCAAGAAGCG TTGCATCGTG GCTCCTGAAA CAGCTTATGT        540
GGCTAGTCCT TTCACACCAC CGCTGCAAGA GCCATATTCT GGGTATCAAA ATGAAGATTA        600
TGAGCTGGAA GAGCAAATCT TGAAGTTGGA GTCGTTTCTT GGGCTGGAAC CTGACCAGAT        660
GGCTGCTCGT CTGAGGGAAA ACGGCGGTGA TAATCGTGAC TCTGGGGACC TTTGGATGCT        720
TGATGATCTT GTGACACATC ATCAGTATCG ACGTCAGATT AATTATTAGT AAAATAATTA        780
ACTACTAATG CTACTGATGC ATGCATCTCT TCTGCTTAAT GTACTGCTTT TGGCTTTTAC        840
AAAAAGACTC TGTTTTATTA ATGTTTAATT AGGGTTTGGT GCCTCATTGT CGTACATACC        900
TTGTGCAATG GAGTATGAGA ATAATACTTT TGTAGCTGCA CTCATTTGCA TCACCTTTTT        960
TTTTTTCTCT AGGTTTGTTT GAAATAAAAA CCTTGGATTT GTGCCAT                     1007
 
Sequence: POPTR_0008s23260.1
submitter of sequence: public data
length: 256
description: amino acid sequence (phytozome 2.0) 
POPTR_0008s23260.1
MCGGAIISDF VTVKRGRRLT VEDLWSELDP FSEFLRFDYH SNDNNGSKKD PSNLLFPQKP         60
SYTIQVQQVI TEKVEKPSHA TEKENGNKKA QRTRKSVYRG IRQRTWGKWA AEIRDPHKGA        120
RVWLGTYNTA EEAAKAYDEA AKRIRGDKAK LNFPSQTPPT PEAPPPAKKR CIVAPETAYV        180
ASPFTPPLQE PYSGYQNEDY ELEEQILKLE SFLGLEPDQM AARLRENGGD NRDSGDLWML        240
DDLVTHHQYR RQINY*                                                        256
 
Sequence: POPTR_0008s23260
submitter of sequence: public data
length: 1194
description: genomic sequence (phytozome 2.0) 
POPTR_0008s23260
CATGTGTGGA GGTGCCATTA TTTCCGATTT TGTTACTGTT AAGCGTGGCC GGAGATTGAC         60
AGTTGAGGAT CTCTGGTCTG AACTTGACCC CTTCTCTGAA TTTCTTAGAT TTGATTATCA        120
CTCTAATGAT AATAATGGTA GTAAAAAAGA CCCATCAAAT CTCTTGTTCC CTCAGAAGCC        180
AAGCTACACC ATCCAAGTCC AGCAAGGTAA TGATACTTTT TTGTTTTTTC ATTTTTTCAT        240
TTTTCTGGGT CTTCCCAAAA TATATATAAT CTTGGATATA TATATAAACA TGGGCTAGGT        300
AGGTTTATCT TGGATTCTTG GCTTGTATCT CTCTGGTTTT TTATTTCTTT AAGGCAAAAA        360
TTTTACTTCT TTTTTCTGTG ATTTTATATA TAGTGATAAC AGAGAAAGTT GAGAAGCCAA        420
GCCATGCCAC AGAGAAAGAA AATGGTAACA AGAAGGCTCA AAGAACCAGA AAGAGTGTGT        480
ATAGAGGAAT AAGGCAAAGG ACATGGGGCA AATGGGCAGC TGAAATAAGA GACCCACACA        540
AAGGTGCTAG AGTTTGGCTT GGCACATACA ACACCGCTGA GGAAGCCGCC AAAGCATATG        600
ATGAAGCCGC TAAACGCATC CGTGGTGATA AAGCCAAGCT CAACTTCCCT TCTCAGACAC        660
CGCCAACTCC GGAGGCGCCA CCACCTGCCA AGAAGCGTTG CATCGTGGCT CCTGAAACAG        720
CTTATGTGGC TAGTCCTTTC ACACCACCGC TGCAAGAGCC ATATTCTGGG TATCAAAATG        780
AAGATTATGA GCTGGAAGAG CAAATCTTGA AGTTGGAGTC GTTTCTTGGG CTGGAACCTG        840
ACCAGATGGC TGCTCGTCTG AGGGAAAACG GCGGTGATAA TCGTGACTCT GGGGACCTTT        900
GGATGCTTGA TGATCTTGTG ACACATCATC AGTATCGACG TCAGATTAAT TATTAGTAAA        960
ATAATTAACT ACTAATGCTA CTGATGCATG CATCTCTTCT GCTTAATGTA CTGCTTTTGG       1020
CTTTTACAAA AAGACTCTGT TTTATTAATG TTTAATTAGG GTTTGGTGCC TCATTGTCGT       1080
ACATACCTTG TGCAATGGAG TATGAGAATA ATACTTTTGT AGCTGCACTC ATTTGCATCA       1140
CCTTTTTTTT TTTCTCTAGG TTTGTTTGAA ATAAAAACCT TGGATTTGTG CCAT             1194
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