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Gene: POPTR_0001s38480.1


  Alternative name:POPTR_0001s38480

Genotype (Genotype)
  species: Populus trichocarpa
  cultivar: unknown

Gene function:
(phytozome 2.0)

Orthologues and co-orthologues identified by INPARANOID
AT3G15030.2 Arabidopsis thaliana
AT3G15030.1 Arabidopsis thaliana
LOC_Os01g11550.1 Oryza sativa japonica

External resources
Phytozome Gene Page
Popgenie
eFP Browser

 
Sequence: POPTR_0001s38480.1
submitter of sequence: public data
length: 1245
description: coding sequence (phytozome 2.0) 
POPTR_0001s38480.1
ATGGGAGAGA GCCACCACCA AGCAGCAACA TCGTCAAGAT TGGGGATAAG AAACACAGTG         60
GGAGAGATTG TGGAGGTCCA AGGAGGCCAC ATTGTTCGGT CCACAGGAAG AAAAGACCGC        120
CACAGCAAGG TCTGTACTGC CAAAGGCCCC AGAGACCGCC GCGTCCGGCT CTCAGCGCAC        180
ACTGCCATCC AGTTCTACGA TGTGCAGGAC CGCCTAGGCT ACGACCGTCC CAGCAAAGCC        240
GTCGATTGGC TCATCAAGAA AGCCAAGGCT TCCATAGACG AGCTTGCAGA GCTACCCGCA        300
TGGGATCCAA CCACAGCGGG ATTCACCCGC GCAACCAGTA AAACTACAAC AAGAAGCACC        360
CAGCAACAAA ACATAAGCGA CGAGAGGGAG TATCAGCTTT CCATGGAAAA TGTTGCCGCT        420
TCAAAAGCAG CAGCAGCAGC AGCAATTGAA GTTCAAAATA TGCAACAGCA AATGGCAGAA        480
AATCCCGACT GTAGTTCGGG TTTTCTGCCA CCATCTTTAG ACTCAGATGC TATTGCTGAC        540
ACAATCAAAA CTTTCTTTCC AATGGGTGCT TCTACGGAGA CATCGTCTCC AACTATACAG        600
TTTCAGAACT ATCCACCAGA TTTGCTGTCA AGAACCAGCA GCCAGAGCCA AGATCTGAGG        660
CTCTCGCTCC AATCATTTCA AGAACCAATT CTTTTGCAAC ATCAAGCACA CCATCATGGC        720
CATCAAGCTC AAAATGAACA TCAAGTGTTC TCTGGAACCA CTGCTCATTA TCTCGGTCTA        780
GATGGCTCTT CTAGTGGGTG GTCTGAGCAG CACCACACAC CAGAAATCAA CCGATTCCAA        840
AGAAATTTGG TGGCTTGGAA TGCAGCTGGC GGCGGCGGCG GCGGCGGAGG TGGAGGATTC        900
TTCTTCAACA CACCACTACC ACCGCTACAG ACGATGTCGC CATCGCCACT TATACAGCCG        960
TTTTTCGGCC AAAACCAGTT TTTTTCACAG AGGGGACCCC TTCAGTCCAG TAACATGCCT       1020
TCAGTTCGTG CTTGGATAGA CCCAGCAATC ACTCCTGATC ATCATGAACA ACAACAAATT       1080
CCACAAATTT ATCATCAGCA AACTGCAATA TCAGGCATTG GATTCACTGC CTCAGGTGGT       1140
GAGTTCTATG GGTTTCGAGT TCCAGCACGA ATTCAAGGCG AAGATGAGGA GCACGACGGC       1200
ATTCACAACA AGCCGTCCTC TGCTTCCTCT GATTCTCGCC ATTGA                       1245
 
Sequence: POPTR_0001s38480.1
submitter of sequence: public data
length: 3054
description: cdna sequence (phytozome 2.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
POPTR_0001s38480.1
GAGAGAGAGA GAGACGCACC ACTCCCTTTG AACTACAACC AACGGTTCTA ACTTCTAACC         60
AGGTCAAGTA GGAATAGTAA AAAAAAATCT TAAAAGAACC GAATTGGAGA GTGAAACATA        120
CCAAACATTG AAAGAAAAGG GTGGAGAGAG AGAGAGAGAG AGAGGAGGAG GGAGTAAAAT        180
AAAGTTGAGG CTTGGAGACT TGTTGATTGA ATCATTAGCT CTTTCTTGGT TGGTGCTTGT        240
GCGTCTTGTG GTAGAAAGAA CAGCAGCAGC AGACGCAGTG ATGAGGTCAC AGAGATCTTT        300
AATCTCATTT CTGACCAAAC ACTGCCACAC TTACCAGTGG CATCATCAAG GACTCCTCTT        360
CTTATAGGTC AAGAAAGGAA GAAAGAATTT ATCTTTCCCC AGCTAGCTAT AGCCCGTATA        420
TTTACTGTTC CATAGCACCA TATCTACCCT TTCCCCTCTC TCTTCCCATA CAAAACGATG        480
AAACAACCGC AGGAGATTTC CCAAGAAGAC CCTTCTTGAG AATTCGGGGG TGTTGCTTGT        540
TCTCGGTCTT CTTTCTCCAG AGGGTGTTTT CCGTATTACC CTTGTGTGGT GCTGCGTAGA        600
GAAGGACAAC CATCAAAAGC CTAGCTAACT GCAGATAGAG AGTCAAGGGA AGAGGAGATG        660
GGTTAGGCTA CCCATAGAGC AGGCATAGGC TTTCAGGCTT GGTTTTCAGT TTTAGGTTAA        720
GAGTTTTTAT TTTATTTTGG AGGTGAAGTG GAAATATTGA ATGGCAGAAC CTTTTGGGAG        780
AGGCAGCAGA AGCAGAAGCA GCAGCAGCAG CATCAGGTAT CAGAGTGGTG GCAGCAGTTG        840
CACAAGCAAC AAGAAGAGAC TAGGAAGCAG CAAATTAGAG AGAGTGGTAA AGAGACAACC        900
CCCACCCATT AAAGAAAAGT GTTATCCAAT AAAAGCTGGA ACAGATAAAG AACAAGGGTC        960
TGAGACTGGA TCCTCGAAGG AATCACCACC ATCACCACCA ACTTCAAAAC ATAGTTCTCA       1020
ATTCAAGACA TGTAGAAGGA GAAGAAGAAC AAGATCATCA ATCACCCAAA CAGCATCAAT       1080
ATCATCATCA ACAACAAGTG CCACCCTTTC TTGGCCACCA TCAATATCTC CAAAACACAG       1140
AGTCCCAACA AGATCAAAAC CAACTCTTAT ATCAAAGATT AGACACACAG CAACAGCAGC       1200
AATCTCCTCT ACAACCATCC AAAAAAAGAT CTTACTTCCT ATCTTCTTCA TCTTCAACTC       1260
TTCAAGAGCA AGGCCTCGAA TATGCAAGAA AAATGGGAGA GAGCCACCAC CAAGCAGCAA       1320
CATCGTCAAG ATTGGGGATA AGAAACACAG TGGGAGAGAT TGTGGAGGTC CAAGGAGGCC       1380
ACATTGTTCG GTCCACAGGA AGAAAAGACC GCCACAGCAA GGTCTGTACT GCCAAAGGCC       1440
CCAGAGACCG CCGCGTCCGG CTCTCAGCGC ACACTGCCAT CCAGTTCTAC GATGTGCAGG       1500
ACCGCCTAGG CTACGACCGT CCCAGCAAAG CCGTCGATTG GCTCATCAAG AAAGCCAAGG       1560
CTTCCATAGA CGAGCTTGCA GAGCTACCCG CATGGGATCC AACCACAGCG GGATTCACCC       1620
GCGCAACCAG TAAAACTACA ACAAGAAGCA CCCAGCAACA AAACATAAGC GACGAGAGGG       1680
AGTATCAGCT TTCCATGGAA AATGTTGCCG CTTCAAAAGC AGCAGCAGCA GCAGCAATTG       1740
AAGTTCAAAA TATGCAACAG CAAATGGCAG AAAATCCCGA CTGTAGTTCG GGTTTTCTGC       1800
CACCATCTTT AGACTCAGAT GCTATTGCTG ACACAATCAA AACTTTCTTT CCAATGGGTG       1860
CTTCTACGGA GACATCGTCT CCAACTATAC AGTTTCAGAA CTATCCACCA GATTTGCTGT       1920
CAAGAACCAG CAGCCAGAGC CAAGATCTGA GGCTCTCGCT CCAATCATTT CAAGAACCAA       1980
TTCTTTTGCA ACATCAAGCA CACCATCATG GCCATCAAGC TCAAAATGAA CATCAAGTGT       2040
TCTCTGGAAC CACTGCTCAT TATCTCGGTC TAGATGGCTC TTCTAGTGGG TGGTCTGAGC       2100
AGCACCACAC ACCAGAAATC AACCGATTCC AAAGAAATTT GGTGGCTTGG AATGCAGCTG       2160
GCGGCGGCGG CGGCGGCGGA GGTGGAGGAT TCTTCTTCAA CACACCACTA CCACCGCTAC       2220
AGACGATGTC GCCATCGCCA CTTATACAGC CGTTTTTCGG CCAAAACCAG TTTTTTTCAC       2280
AGAGGGGACC CCTTCAGTCC AGTAACATGC CTTCAGTTCG TGCTTGGATA GACCCAGCAA       2340
TCACTCCTGA TCATCATGAA CAACAACAAA TTCCACAAAT TTATCATCAG CAAACTGCAA       2400
TATCAGGCAT TGGATTCACT GCCTCAGGTG GTGAGTTCTA TGGGTTTCGA GTTCCAGCAC       2460
GAATTCAAGG CGAAGATGAG GAGCACGACG GCATTCACAA CAAGCCGTCC TCTGCTTCCT       2520
CTGATTCTCG CCATTGATCG AGCAAAAACG TCAAAAATTT CACCTTTACC AGGACTTGTT       2580
CATTGTTTAA GAGAGACTAA TACGGTGCTA AGAAGATATT TCAAAGACTG GCCTGGTGAC       2640
TTGAAGATGA ATCAATGGCA TATACCGTGG GAAGAGAGAG AGATCTGAGT GGATGTTTCA       2700
GGTTTTTCGA TCCCCGGTCT GTTTAGTTTC TATCAGATGT TTATTAGTAT TACGTTCTAG       2760
CTGTTGTTTT AGCTTCCATG TGTGGGAGGG CTTTGATACC TCAGCTTTGC TTCGAACTTG       2820
TGTTGGATTG GCTGTGTGTT TATGTGGCTA CACTTTTTGT ATGTCATGGA TGTTTGGTTG       2880
TATTTGATTC CATTTCTAGA ATTGCTGATA GAAGCAGAAC TACTTTGATT TGATGAATGG       2940
TTTCATGTTT TCCCCAACTA GAGCAGACCT GATAGGCATA ATCTGTTATC CTTTCAATGA       3000
TTTTCTGTAA AACAGGCAAC CCCAGATCAG CAAACATAGA CTTTTTGCAG TAGC             3054
 
Sequence: POPTR_0001s38480.1
submitter of sequence: public data
length: 415
description: amino acid sequence (phytozome 2.0) 
POPTR_0001s38480.1
MGESHHQAAT SSRLGIRNTV GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH         60
TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA SIDELAELPA WDPTTAGFTR ATSKTTTRST        120
QQQNISDERE YQLSMENVAA SKAAAAAAIE VQNMQQQMAE NPDCSSGFLP PSLDSDAIAD        180
TIKTFFPMGA STETSSPTIQ FQNYPPDLLS RTSSQSQDLR LSLQSFQEPI LLQHQAHHHG        240
HQAQNEHQVF SGTTAHYLGL DGSSSGWSEQ HHTPEINRFQ RNLVAWNAAG GGGGGGGGGF        300
FFNTPLPPLQ TMSPSPLIQP FFGQNQFFSQ RGPLQSSNMP SVRAWIDPAI TPDHHEQQQI        360
PQIYHQQTAI SGIGFTASGG EFYGFRVPAR IQGEDEEHDG IHNKPSSASS DSRH*             415
 
Sequence: POPTR_0001s38480
submitter of sequence: public data
length: 3139
description: genomic sequence (phytozome 2.0) 
POPTR_0001s38480
GAGAGAGAGA GAGACGCACC ACTCCCTTTG AACTACAACC AACGGTTCTA ACTTCTAACC         60
AGGTCAAGTA GGAATAGTAA AAAAAAATCT TAAAAGAACC GAATTGGAGA GTGAAACATA        120
CCAAACATTG AAAGAAAAGG GTGGAGAGAG AGAGAGAGAG AGAGGAGGAG GGAGTAAAAT        180
AAAGTTGAGG CTTGGAGACT TGTTGATTGA ATCATTAGCT CTTTCTTGGT TGGTGCTTGT        240
GCGTCTTGTG GTAGAAAGAA CAGCAGCAGC AGACGCAGTG ATGAGGTCAC AGAGATCTTT        300
AATCTCATTT CTGACCAAAC ACTGCCACAC TTACCAGTGG CATCATCAAG GACTCCTCTT        360
CTTATAGGTC AAGAAAGGAA GAAAGAATTT ATCTTTCCCC AGCTAGCTAT AGCCCGTATA        420
TTTACTGTTC CATAGCACCA TATCTACCCT TTCCCCTCTC TCTTCCCATA CAAAACGATG        480
AAACAACCGC AGGAGATTTC CCAAGAAGAC CCTTCTTGAG AATTCGGGGG TGTTGCTTGT        540
TCTCGGTCTT CTTTCTCCAG AGGGTGTTTT CCGTATTACC CTTGTGTGGT GCTGCGTAGA        600
GAAGGACAAC CATCAAAAGC CTAGCTAACT GCAGATAGAG AGTCAAGGGA AGAGGAGATG        660
GGTTAGGCTA CCCATAGAGC AGGCATAGGC TTTCAGGCTT GGTTTTCAGT TTTAGGTTAA        720
GAGTTTTTAT TTTATTTTGG AGGTGAAGTG GAAATATTGA ATGGCAGAAC CTTTTGGGAG        780
AGGCAGCAGA AGCAGAAGCA GCAGCAGCAG CATCAGGTAT CAGAGTGGTG GCAGCAGTTG        840
CACAAGCAAC AAGAAGAGAC TAGGAAGCAG CAAATTAGAG AGAGTGGTAA AGAGACAACC        900
CCCACCCATT AAAGAAAAGT GTTATCCAAT AAAAGCTGGA ACAGATAAAG AACAAGGGTC        960
TGAGACTGGA TCCTCGAAGG AATCACCACC ATCACCACCA ACTTCAAAAC ATAGTTCTCA       1020
ATTCAAGACA TGTAGAAGGA GAAGAAGAAC AAGATCATCA ATCACCCAAA CAGCATCAAT       1080
ATCATCATCA ACAACAAGTG CCACCCTTTC TTGGCCACCA TCAATATCTC CAAAACACAG       1140
AGTCCCAACA AGATCAAAAC CAACTCTTAT ATCAAAGATT AGACACACAG CAACAGCAGC       1200
AATCTCCTCT ACAACCATCC AAAAAAAGAT CTTACTTCCT ATCTTCTTCA TCTTCAACTC       1260
TTCAAGAGCA AGGCCTCGAA TATGCAAGAA AAATGGGAGA GAGCCACCAC CAAGCAGCAA       1320
CATCGTCAAG ATTGGGGATA AGAAACACAG TGGGAGAGAT TGTGGAGGTC CAAGGAGGCC       1380
ACATTGTTCG GTCCACAGGA AGAAAAGACC GCCACAGCAA GGTCTGTACT GCCAAAGGCC       1440
CCAGAGACCG CCGCGTCCGG CTCTCAGCGC ACACTGCCAT CCAGTTCTAC GATGTGCAGG       1500
ACCGCCTAGG CTACGACCGT CCCAGCAAAG CCGTCGATTG GCTCATCAAG AAAGCCAAGG       1560
CTTCCATAGA CGAGCTTGCA GAGCTACCCG CATGGGATCC AACCACAGCG GGATTCACCC       1620
GCGCAACCAG TAAAACTACA ACAAGAAGCA CCCAGCAACA AAACATAAGC GACGAGAGGG       1680
AGTATCAGCT TTCCATGGAA AATGTTGCCG CTTCAAAAGC AGCAGCAGCA GCAGCAATTG       1740
AAGTTCAAAA TATGCAACAG CAAATGGCAG AAAATCCCGA CTGTAGTTCG GGTTTTCTGC       1800
CACCATCTTT AGACTCAGAT GCTATTGCTG ACACAATCAA AACTTTCTTT CCAATGGGTG       1860
CTTCTACGGA GACATCGTCT CCAACTATAC AGTTTCAGAA CTATCCACCA GATTTGCTGT       1920
CAAGAACCAG CAGCCAGAGC CAAGATCTGA GGCTCTCGCT CCAATCATTT CAAGAACCAA       1980
TTCTTTTGCA ACATCAAGCA CACCATCATG GCCATCAAGC TCAAAATGAA CATCAAGTGT       2040
TCTCTGGAAC CACTGCTCAT TATCTCGGTC TAGATGGCTC TTCTAGTGGG TGGTCTGAGC       2100
AGCACCACAC ACCAGAAATC AACCGATTCC AAAGAAATTT GGTGGCTTGG AATGCAGCTG       2160
GCGGCGGCGG CGGCGGCGGA GGTGGAGGAT TCTTCTTCAA CACACCACTA CCACCGCTAC       2220
AGACGATGTC GCCATCGCCA CTTATACAGC CGTTTTTCGG CCAAAACCAG TTTTTTTCAC       2280
AGAGGGGACC CCTTCAGTCC AGTAACATGC CTTCAGTTCG TGCTTGGATA GACCCAGCAA       2340
TCACTCCTGA TCATCATGAA CAACAACAAA TTCCACAAAT TTATCATCAG CAAACTGCAA       2400
TATCAGGCAT TGGATTCACT GCCTCAGGTG GTGAGTTCTA TGGGTTTCGA GTTCCAGCAC       2460
GAATTCAAGG CGAAGATGAG GAGCACGACG GCATTCACAA CAAGCCGTCC TCTGCTTCCT       2520
CTGATTCTCG CCATTGATCG AGCAAAAACG TCAAAAATTT CACCTTTACC AGGTGCTACC       2580
ATAAGAACCC ATTTCTCAAT TTCATATATT CTATCCATAT AATGTCATCA TTTTTTCATT       2640
TTAGCTCGTT CTTGCAGGAC TTGTTCATTG TTTAAGAGAG ACTAATACGG TGCTAAGAAG       2700
ATATTTCAAA GACTGGCCTG GTGACTTGAA GATGAATCAA TGGCATATAC CGTGGGAAGA       2760
GAGAGAGATC TGAGTGGATG TTTCAGGTTT TTCGATCCCC GGTCTGTTTA GTTTCTATCA       2820
GATGTTTATT AGTATTACGT TCTAGCTGTT GTTTTAGCTT CCATGTGTGG GAGGGCTTTG       2880
ATACCTCAGC TTTGCTTCGA ACTTGTGTTG GATTGGCTGT GTGTTTATGT GGCTACACTT       2940
TTTGTATGTC ATGGATGTTT GGTTGTATTT GATTCCATTT CTAGAATTGC TGATAGAAGC       3000
AGAACTACTT TGATTTGATG AATGGTTTCA TGTTTTCCCC AACTAGAGCA GACCTGATAG       3060
GCATAATCTG TTATCCTTTC AATGATTTTC TGTAAAACAG GCAACCCCAG ATCAGCAAAC       3120
ATAGACTTTT TGCAGTAGC                                                    3139
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