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Gene: LOC_Os08g44450.1


  Alternative name:13108.m04829

Genotype (Genotype)
  species: Oryza sativa japonica
  name: (Japanese rice)
  type: wildtype

Gene function:
protein L1P family of ribosomal proteins domain containing protein, expressed (TIGR 6.1)

Gene Ontology
GO termIdentifierType
translationGO:0006412biological process
structural molecule activityGO:0005198molecular function
ribosomeGO:0005840cellular component
cytosolGO:0005829cellular component

Related with
HF08B21 cDNA clone
HI09I12 cDNA clone
HF12K11 cDNA clone
HY05O22 cDNA clone
HD14H11 cDNA clone
HF14G04 cDNA clone
HF21O12 cDNA clone
HY06F05 cDNA clone
HF09I15 cDNA clone
HF14P23 cDNA clone
HF08P23 cDNA clone
HF12O07 cDNA clone
HF24G08 cDNA clone
HI11H12 cDNA clone
HD07E05 cDNA clone
HF16A08 cDNA clone
HF24N14 cDNA clone
HM07L08 cDNA clone
HD12B12 cDNA clone
HD07F08 cDNA clone
HF11G05 cDNA clone
HB32O08 cDNA clone
HD08N05 cDNA clone
HM07L13 cDNA clone
HD08M21 cDNA clone
HF03O10 cDNA clone
HD07L18 cDNA clone
HD08J10 cDNA clone
HD14B11 cDNA clone
HA20K17 cDNA clone
HA14I18 cDNA clone
HA20B11 cDNA clone
HA16M13 cDNA clone
HA18P15 cDNA clone
HA18D13 cDNA clone
HA03A19 cDNA clone
HS18P03 cDNA clone
HA10E03 cDNA clone
HA03H17 cDNA clone
HU03G24 cDNA clone
HA17G15 cDNA clone
HT01E24 cDNA clone
HA14M02 cDNA clone
HA10C01 cDNA clone
HX04A08 cDNA clone
HA12N17 cDNA clone
HA13B21 cDNA clone
HX03N10 cDNA clone
HM12K01 cDNA clone
HS05G07 cDNA clone
HT11L10 cDNA clone
HV05J24 cDNA clone
HV11O02 cDNA clone
HY01K11 cDNA clone
HA28G07 cDNA clone
HA22P14 cDNA clone
HA24G13 cDNA clone
HA27J15 cDNA clone
HA30D04 cDNA clone
HB15D22 cDNA clone
HA23G13 cDNA clone
HA26K21 cDNA clone
HB06O15 cDNA clone
HA27P03 cDNA clone
HA26C18 cDNA clone
HB17H18 cDNA clone
HB13P06 cDNA clone
HF01C05 cDNA clone
HD03B17 cDNA clone
HD01K06 cDNA clone
HD03O22 cDNA clone
HD01H18 cDNA clone
HD03O02 cDNA clone
HM02C07 cDNA clone
HA06F22 cDNA clone
HD01P08 cDNA clone
HA08B01 cDNA clone
HF01M21 cDNA clone
Xa21_454_55344 cDNA clone
Xa21_454_1751 cDNA clone
Xa21_454_2015 cDNA clone
Xa21_454_12646 cDNA clone
Xa21_454_3230 cDNA clone
HA10L12 cDNA clone
HA02J07 cDNA clone
HH04E01 cDNA clone
HA02B23 cDNA clone
HD10E23 cDNA clone
HL02A15 cDNA clone
HM05L13 cDNA clone
HA05A06 cDNA clone
GAN005E01 cDNA clone
HL01H22 cDNA clone
HD10M10 cDNA clone
HL02K21 cDNA clone
HX10E12 cDNA clone
HL01P22 cDNA clone
HA02L06 cDNA clone
HM05L08 cDNA clone
HH07J03 cDNA clone
HA02O09 cDNA clone
HW09P23 cDNA clone
HA30K14 cDNA clone
HD03M24 cDNA clone
HO17G11 cDNA clone
HH03N07 cDNA clone
HH05H04 cDNA clone
GNW003K02 cDNA clone
HM11M03 cDNA clone
HF17N08 cDNA clone
MPMGp2010G21107 cDNA clone
MPMGp2010I05109 cDNA clone
MPMGp2010I21110 cDNA clone
HH01M24 cDNA clone
HX09F08 cDNA clone
HX12F10 cDNA clone
HZ51F08 cDNA clone
HV14D22 cDNA clone
HZ45M21 cDNA clone
HZ46D20 cDNA clone
HZ39I06 cDNA clone
HX13J23 cDNA clone
HX10L13 cDNA clone
HZ41I18 cDNA clone
HZ53H10 cDNA clone
HX12M02 cDNA clone
Contig1939_at Affymetrix representative on Barley1
Contig1945_at Affymetrix representative on Barley1

Orthologues and co-orthologues identified by INPARANOID
CRE3_195585 Chlamydomonas reinhardtii
LOC_Os08g44450.2 Oryza sativa japonica
LOC_Os02g21660.1 Oryza sativa japonica
LOC_Os01g64090.1 Oryza sativa japonica
POPTR_0007s11880.1 Populus trichocarpa
POPTR_0004s21290.1 Populus trichocarpa

External resources
Michigan State University - Rice Genome Annotation
Aramemnon
Gramene
PlnTFDB
MapCave
iHOP (13108.m04829)
 
Sequence: LOC_Os08g44450.1
submitter of sequence: public data
length: 669
description: coding sequence (MSU 6.1) 
LOC_Os08g44450.1
ATGAGTAAGT TGCAGAGCGA GGTTCTCAAG GAAGCCATCT CCCAGGTTGT TGGGGAATCC         60
AAGGAGAAGG GCAGGAAGTT CACCGAGACC GTTGAGCTTC AGATTGGTCT CAAGAACTAT        120
GACCCGCAAA AGGACAAGCG TTTCAGCGGC TCCGTCAAGC TGCCCCATAT CCCCCGCCCC        180
AAGATGAAGG TCTGCATGCT TGGTGATGCC CAGCATGTCG AGGAGGCTGA GAAGATTGGG        240
CTTGACTACA TGGATGTTGA GGCTCTTAAG AAAATGAACA AGAACAAGAA GCTGGTTAAG        300
AAGCTTGCCA AGAAGTACCA TGCTTTCTTA GCATCAGAGG CCATCATCAA GCAGATTCCT        360
CGTCTCCTTG GTCCTGGTCT CAACAAGGCA GGCAAGTTCC CTACATTGGT TACTCACCAG        420
GAGTCTCTTG AATCCAAGGT CAACGAGACG AAAGCTACAG TCAAGTTCCA GCTGAAGAAG        480
GTTCTGTGCA TGGGTGTTGC TGTGGGTAAC TTGTCAATGG AGGAGAAGCA GATCCAGCAA        540
AACATCCAAA TGAGCGTCAA CTTCCTCGTG TCCCTTTTGA AAAAGAACTG GCAGAATGTG        600
AGTGCCTTTA CATCAAGAGC ACCATGGGGA AACCAATCAG GGTGTTCTAA GTTGGTGTGT        660
TCCACCTAG                                                                669
 
Sequence: LOC_Os08g44450.1
submitter of sequence: public data
length: 1202
description: cdna sequence (MSU 6.1)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
LOC_Os08g44450.1
TCACTCGCCG CCTTCTCTCC TCTCGCGCCG TTTCGCTCCC TGACCCTCCG CCGCCGCCGC         60
CGCCGATCAT CATGAGTAAG TTGCAGAGCG AGGTTCTCAA GGAAGCCATC TCCCAGGTTG        120
TTGGGGAATC CAAGGAGAAG GGCAGGAAGT TCACCGAGAC CGTTGAGCTT CAGATTGGTC        180
TCAAGAACTA TGACCCGCAA AAGGACAAGC GTTTCAGCGG CTCCGTCAAG CTGCCCCATA        240
TCCCCCGCCC CAAGATGAAG GTCTGCATGC TTGGTGATGC CCAGCATGTC GAGGAGGCTG        300
AGAAGATTGG GCTTGACTAC ATGGATGTTG AGGCTCTTAA GAAAATGAAC AAGAACAAGA        360
AGCTGGTTAA GAAGCTTGCC AAGAAGTACC ATGCTTTCTT AGCATCAGAG GCCATCATCA        420
AGCAGATTCC TCGTCTCCTT GGTCCTGGTC TCAACAAGGC AGGCAAGTTC CCTACATTGG        480
TTACTCACCA GGAGTCTCTT GAATCCAAGG TCAACGAGAC GAAAGCTACA GTCAAGTTCC        540
AGCTGAAGAA GGTTCTGTGC ATGGGTGTTG CTGTGGGTAA CTTGTCAATG GAGGAGAAGC        600
AGATCCAGCA AAACATCCAA ATGAGCGTCA ACTTCCTCGT GTCCCTTTTG AAAAAGAACT        660
GGCAGAATGT GAGTGCCTTT ACATCAAGAG CACCATGGGG AAACCAATCA GGGTGTTCTA        720
AGTTGGTGTG TTCCACCTAG AAGTGAAAAG GATCAGTTGA AACCAAGCTT TTCCTCTTAA        780
AATAGACCTG TCGCTCTGGG ACCGGCTTTT GTCTGTCAGT GCAAGAGAAT ATATCAAAGA        840
AATATCTGGA CCTTATTTTT GTAGCGTGTT TATTTGGGAG TAACTTATTC TACGTAAGCT        900
TCTAATGTGG AAATTCTATG TGTGTTATGC TGCTCCTACA TACTCCCTCC GTTTCGGAAT        960
GTTTGACGCC GTTGACTTTT TATTACATGT TTGACCGTTC GTCTTATTCA AAAAATTTTG       1020
ACACTTAATA ATTCTTTTCC TATCATTTGA TTCATTGTTA AATATATTTT CATGTAGGCA       1080
TATAATTTTA CATATTTCAT AAAAGTTTTT GAATAAGACG AACAGTCAAA CATGTGCTAA       1140
AAAGTCAACG GTGTCAAATA TTTCGAAACG GAGGGAGTAT AAGCCTTTTT ACCTTGCAAG       1200
AT                                                                      1202
 
Sequence: LOC_Os08g44450
submitter of sequence: public data
length: 2544
description: genomic sequence (MSU 6.1) 
LOC_Os08g44450
TCACTCGCCG CCTTCTCTCC TCTCGCGCCG TTTCGCTCCC TGACCCTCCG CCGCCGCCGC         60
CGCCGATCAT CATGAGGTGA TTCCCGCCGC CCAATCTCTA CTTCCCTTCT TACGGTTAAC        120
GAATCTCTTC TATTGCTTAG TTTCTGTCGC TATGGCCTTC TGTGATTCTG CGCGCTTGCT        180
TTGTTAGATC AAAGCTCTTA TTAAGATGTA AGAAGATGAT ATGGAATTCG GACGATTTGT        240
TTAGTTTATG TCTCATTAAA GCGATGGATC TCGAGATAGA CTGGGATCAC GTAGCTGTAC        300
ACCTTGCATG ATCTAGAGTT TTCTGCTTCT CGCTAGAGAT CAGTGGCGCT AGCTAGATTA        360
TGTCTGAATA TAGGTTACTG ATCGGTATAA GAAATGCTCG TTCTTTGTTT CCTGAACAAA        420
ATTCACGTGC TGAGCTTGCG TGATCAATTG CAGTAAGTTG CAGAGCGAGG TTCTCAAGGA        480
AGCCATCTCC CAGGTTGTTG GGGAATCCAA GGAGAAGGGC AGGAAGTTCA CCGAGACCGT        540
TGAGCTTCAG ATTGGTCTCA AGAACTATGA CCCGCAAAAG GACAAGCGTT TCAGCGGCTC        600
CGTCAAGCTG CCCCATATCC CCCGCCCCAA GATGAAGGTC TGCATGCTTG GTGATGCCCA        660
GCATGTCGAG GAGGTAAGAT TATGATGCCA TACCCATTTT GATTTTGTAA ATTTGTACAC        720
CCTCCGTTTA GATTGAAATT GAGGATTTTC CTTTCTCACT CATGTAAGTG ACCTTAGATT        780
ATTTAAGTCT TTGTTTTACA TTCTTGTAGT ATCTTAACTG AAACATATTT CATATTTTTA        840
ATTTGTTTGG TTGAATTATT ATTTGTGCCT TGCCTGATAT ATTGTCTGGG TCCTTCTCCA        900
TTGCATCTCA AGTGTTGTAT GCTATGTATA ATTGGCTGGA GTCTGAAATT AAGAATGTTC        960
ACACGTTGTT TGTGGATCAA TTTATTCTGT CTAATGAGAA TTTATTTATC TGCCAACTTG       1020
CTGCGGATTG GCTCGTGTGC AGGCTGAGAA GATTGGGCTT GACTACATGG ATGTTGAGGC       1080
TCTTAAGAAA ATGAACAAGA ACAAGAAGCT GGTTAAGAAG CTTGCCAAGA AGTACCATGC       1140
TTTCTTAGCA TCAGAGGCCA TCATCAAGCA GATTCCTCGT CTCCTTGGTC CTGGTCTCAA       1200
CAAGGCAGGC AAGTATTCCA TTTTCTGACA TTCTTGCTTT TTCTTGGTGT AGTTCTGAAT       1260
TTTAACGAGT GCATGCTAGT TTTTCTTGGT GTAGTTTTGA ATTCTAATGA GTACATGCTA       1320
GTTTTTCTTG GTGTAGTTAT GAATTCTAAC GTGCACAGTA TTGTTTCATA TGCCTCACTG       1380
CTACCTGAAT AGTACTACAA ATTTATAGTT GACCTGCAGT GAAACATAAC TATCATCTAG       1440
GTGTTACATT GTATTTCATT TTTCATGGCG TTGTCTTTTT ATGCTAATTT CATGCCAACT       1500
GTTAACTGTT GTAGGACCTA AACTGTCCAA TTGGACCTTA ATCTAGTAAC TGTGTGAAGT       1560
TTACCCATAT GTTTTTTTAG ACTCTGGCTA GTTGGGGTTT ACCAAGGCAG ATTGGTTAAT       1620
TGAATCATTT TGATCACACT GCAGGCAAGT TCCCTACATT GGTTACTCAC CAGGAGTCTC       1680
TTGAATCCAA GGTCAACGAG ACGAAAGCTA CAGTCAAGTT CCAGCTGAAG AAGGTTCTGT       1740
GCATGGGTGT TGCTGTGGGT AACTTGTCAA TGGAGGAGAA GCAGATCCAG CAAAACATCC       1800
AAATGAGCGT CAACTTCCTC GTGTCCCTTT TGAAAAAGAA CTGGCAGAAT GTGAGTTATC       1860
TGTTCTGAGC CTGTTTGCAT GCAATTAAAC TTACAGCTCA AATCTGTTTA ACAACATAGT       1920
GAATATATAT GAGTTTTGGC CTTGCTTTGA ATAATAGTTT TATGTGAGAA AACAACTGAT       1980
GATAACTTGG AATTGTTTGT GTTTGATAGG TGAGGTGCCT TTACATCAAG AGCACCATGG       2040
GGAAACCAAT CAGGGTGTTC TAAGTTGGTG TGTTCCACCT AGAAGTGAAA AGGATCAGTT       2100
GAAACCAAGC TTTTCCTCTT AAAATAGACC TGTCGCTCTG GGACCGGCTT TTGTCTGTCA       2160
GTGCAAGAGA ATATATCAAA GAAATATCTG GACCTTATTT TTGTAGCGTG TTTATTTGGG       2220
AGTAACTTAT TCTACGTAAG CTTCTAATGT GGAAATTCTA TGTGTGTTAT GCTGCTCCTA       2280
CATACTCCCT CCGTTTCGGA ATGTTTGACG CCGTTGACTT TTTATTACAT GTTTGACCGT       2340
TCGTCTTATT CAAAAAATTT TGACACTTAA TAATTCTTTT CCTATCATTT GATTCATTGT       2400
TAAATATATT TTCATGTAGG CATATAATTT TACATATTTC ATAAAAGTTT TTGAATAAGA       2460
CGAACAGTCA AACATGTGCT AAAAAGTCAA CGGTGTCAAA TATTTCGAAA CGGAGGGAGT       2520
ATAAGCCTTT TTACCTTGCA AGAT                                              2544
 
Sequence: LOC_Os08g44450.1
submitter of sequence: public data
length: 223
description: amino acid sequence (MSU 6.1) 
LOC_Os08g44450.1
MSKLQSEVLK EAISQVVGES KEKGRKFTET VELQIGLKNY DPQKDKRFSG SVKLPHIPRP         60
KMKVCMLGDA QHVEEAEKIG LDYMDVEALK KMNKNKKLVK KLAKKYHAFL ASEAIIKQIP        120
RLLGPGLNKA GKFPTLVTHQ ESLESKVNET KATVKFQLKK VLCMGVAVGN LSMEEKQIQQ        180
NIQMSVNFLV SLLKKNWQNV SAFTSRAPWG NQSGCSKLVC ST*                          223
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