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Gene: AT3G07650.3


  Alternative name:COL9
  Alternative name:AT3G07650
  Alternative name:CONSTANS-LIKE 9

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding (TAIR 9.0)

Gene Ontology
GO termIdentifierType
negative regulation of long-day photoperiodism, floweringGO:0048579biological process
zinc ion bindingGO:0008270molecular function
regulation of transcriptionGO:0045449biological process
transcription factor activityGO:0003700molecular function
nucleusGO:0005634cellular component

Related with
131F04 T-DNA Line
259244_at Affymetrix representative on ATH1-121501
MSU_p955K179 cDNA clone
MSU_p955A089 cDNA clone
REGIo476H104D cDNA clone

Orthologues and co-orthologues identified by INPARANOID
AT3G07650.1 Arabidopsis thaliana
AT3G07650.2 Arabidopsis thaliana
AT3G07650.4 Arabidopsis thaliana
AT3G07650.1 Arabidopsis thaliana
AT3G07650.4 Arabidopsis thaliana
AT3G07650.2 Arabidopsis thaliana
LOC_Os06g19444.1 Oryza sativa japonica
POPTR_0014s16870.1 Populus trichocarpa

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
MapCave
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
SLocX
iHOP (COL9)
iHOP (AT3G07650)
 
Sequence: AT3G07650.3
submitter of sequence: public data
length: 1119
description: coding sequence (TAIR 9.0)
AT3G07650.3
ATGGGTTACA TGTGTGACTT CTGTGGTGAA CAAAGATCTA TGGTGTACTG TCGATCCGAT         60
GCAGCTTGTT TGTGTCTCTC CTGTGACCGG AGTGTTCATT CCGCTAATGC ATTGTCCAAA        120
CGACATTCTC GGACACTTGT CTGCGAGAGA TGCAATGCTC AGCCTGCTAC TGTCAGGTGT        180
GTTGAAGAAA GGGTTTCACT CTGTCAAAAC TGTGACTGGT CTGGCCACAA CAACAGCAAC        240
AACAACAATT CTTCGTCTTC TTCTACTTCG CCGCAGCAGC ATAAGAGGCA AACCATAAGT        300
TGCTATTCGG GTTGCCCTTC CAGCTCAGAA CTCGCTTCCA TTTGGTCTTT CTGTTTGGAC        360
TTAGCTGGAC AATCTATTTG TGAACAAGAA CTGGGTATGA TGAATATAGA CGATGATGGT        420
CCTACCGACA AGAAAACTTG TAATGAGGAT AAGAAAGATG TCTTGGTTGG ATCCTCTTCA        480
ATTCCTGAAA CCAGTTCTGT ACCACAAGGA AAATCATCTT CTGCTAAGGA TGTTGGAATG        540
TGTGAAGATG ACTTCTACGG GAACCTTGGT ATGGATGAAG TTGACATGGC ACTTGAGAAC        600
TATGAAGAAC TCTTTGGTAC CGCCTTTAAC CCCTCTGAAG AGCTATTCGG GCATGGTGGA        660
ATCGATAGCC TTTTCCATAA GCACCAAACA GCTCCAGAGG GAGGGAATTC GGTGCAGCCA        720
GCAGGCAGTA ATGATTCGTT CATGAGTTCG AAAACTGAGC CAATAATTTG CTTCGCATCG        780
AAGCCAGCAC ATTCGAACAT ATCCTTCTCT GGAGTCACTG GAGAAAGTAG TGCTGGAGAT        840
TTCCAAGAAT GTGGTGCATC ATCTTCCATA CAGCTCTCGG GGGAGCCACC ATGGTATCCT        900
CCAACATTAC AGGATAACAA TGCCTGCTCA CATTCAGTAA CCCGTAATAA CGCAGTTATG        960
CGTTACAAGG AGAAGAAGAA GGCTCGCAAG TTTGATAAGA GAGTGAGGTA TGCTTCCCGC       1020
AAAGCAAGAG CTGATGTGAG ACGGCGTGTA AAGGGGCGAT TTGTCAAAGC TGGTGAAGCT       1080
TATGATTACG ACCCTCTCAC CCCAACCAGA AGTTATTGA                              1119
 
Sequence: AT3G07650.3
submitter of sequence: public data
length: 373
description: amino acid sequence (TAIR 9.0)
AT3G07650.3
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC         60
VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS CYSGCPSSSE LASIWSFCLD        120
LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM        180
CEDDFYGNLG MDEVDMALEN YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP        240
AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP        300
PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA        360
YDYDPLTPTR SY*                                                           373
 
Sequence: AT3G07650.3
submitter of sequence: public data
length: 1837
description: cdna sequence (TAIR 9.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
AT3G07650.3
CATTTCTTCC TCCAGAGAGA GAGAGAGAAG CCACAACAAG AAGAAGAAGA AGAAGAAGAA         60
GAAGAAGAAG TTCTGGAATA GTCATCATCT TCTCTGTTTC TAGGCTTTGT TTATTTGTCT        120
CTAAAGTTTC TGGATTCAAC TTCTGAAGAA GATAGTAGTA GTCCACAAGA AGGATCTTCT        180
TTACAAAGTT GATTTGGTCA GAGCCAAGGA AGATGGGTTA CATGTGTGAC TTCTGTGGTG        240
AACAAAGATC TATGGTGTAC TGTCGATCCG ATGCAGCTTG TTTGTGTCTC TCCTGTGACC        300
GGAGTGTTCA TTCCGCTAAT GCATTGTCCA AACGACATTC TCGGACACTT GTCTGCGAGA        360
GATGCAATGC TCAGCCTGCT ACTGTCAGGT GTGTTGAAGA AAGGGTTTCA CTCTGTCAAA        420
ACTGTGACTG GTCTGGCCAC AACAACAGCA ACAACAACAA TTCTTCGTCT TCTTCTACTT        480
CGCCGCAGCA GCATAAGAGG CAAACCATAA GTTGCTATTC GGGTTGCCCT TCCAGCTCAG        540
AACTCGCTTC CATTTGGTCT TTCTGTTTGG ACTTAGCTGG ACAATCTATT TGTGAACAAG        600
AACTGGGTAT GATGAATATA GACGATGATG GTCCTACCGA CAAGAAAACT TGTAATGAGG        660
ATAAGAAAGA TGTCTTGGTT GGATCCTCTT CAATTCCTGA AACCAGTTCT GTACCACAAG        720
GAAAATCATC TTCTGCTAAG GATGTTGGAA TGTGTGAAGA TGACTTCTAC GGGAACCTTG        780
GTATGGATGA AGTTGACATG GCACTTGAGA ACTATGAAGA ACTCTTTGGT ACCGCCTTTA        840
ACCCCTCTGA AGAGCTATTC GGGCATGGTG GAATCGATAG CCTTTTCCAT AAGCACCAAA        900
CAGCTCCAGA GGGAGGGAAT TCGGTGCAGC CAGCAGGCAG TAATGATTCG TTCATGAGTT        960
CGAAAACTGA GCCAATAATT TGCTTCGCAT CGAAGCCAGC ACATTCGAAC ATATCCTTCT       1020
CTGGAGTCAC TGGAGAAAGT AGTGCTGGAG ATTTCCAAGA ATGTGGTGCA TCATCTTCCA       1080
TACAGCTCTC GGGGGAGCCA CCATGGTATC CTCCAACATT ACAGGATAAC AATGCCTGCT       1140
CACATTCAGT AACCCGTAAT AACGCAGTTA TGCGTTACAA GGAGAAGAAG AAGGCTCGCA       1200
AGTTTGATAA GAGAGTGAGG TATGCTTCCC GCAAAGCAAG AGCTGATGTG AGACGGCGTG       1260
TAAAGGGGCG ATTTGTCAAA GCTGGTGAAG CTTATGATTA CGACCCTCTC ACCCCAACCA       1320
GAAGTTATTG AAGACTCCTT TTGAAAGGTA CATAGATATA TATACATGGC GAAGAATCGA       1380
ACAAGAAAGG TTTTGACTTA TGGGCAGTTT CAAGTGAGCA ACTTGGAAAA TTGTGGGTTA       1440
GTAACAAAAC AAGACTACTG TAGCATGAAC AGATTTCAAG ACTGACTCTT GCGTCTCACA       1500
CTGATCAGGG TTCCATGAAT TTTGTTCTTC TCTTGGTAGT TAAAAAGGCA GGGAAGGAGA       1560
TTTAGAGTAA TTTAAACAAT ATGTGATTGT TGTATATGCC TTTGTATTTG TTTGTATACT       1620
CATAAATGTT TTTCTGTTTT GTACTCGGCA TTCTTGTAAA TTAAAGACAT TATCCACATT       1680
CTTCTATAGA CAAAGAAAGT TATGTGGTAC CACTTAACCT AAGTCTCGTT CTGTAACAAC       1740
CGACTAGTAC TAGTTCAAGT TTAACGAGAT TTTGGTTTGT AGTAACTTCA AGAGGTTGAT       1800
CCAACAATGA GGCAATGCAA AACATCTGAA CTTTATT                                1837
 
Sequence: AT3G07650.3
submitter of sequence: public data
length: 2876
description: genomic sequence (TAIR 9.0)
AT3G07650.3
CATTTCTTCC TCCAGAGAGA GAGAGAGAAG CCACAACAAG AAGAAGAAGA AGAAGAAGAA         60
GAAGAAGAAG TTCTGGAATA GTCATCATCT TCTCTGTTTC TAGGCTTTGT TTATTTGTCT        120
CTAAAGTTTC TGGATTCAAC TTCTGAAGAA GATAGTAGTA GTCCACAAGA AGGATCTTCT        180
TTACGTGAGT TGTTTGTTTC TCTTCTCCCT CTGTCTTTTC TTTTCTGATT TTAATAATCC        240
CAAGTGTGTT CTTATTTTCT TGCTATCTGT TGTATAATTG GTGTTAGTGA TTGATTATTC        300
ATTGTATATC GATGAAGGGT TGGTTTTGAT TTTTGTTGAA TTGGATCTTT TGATTTGGGG        360
TTTTAAAACT TGTTCGGATG ATGATGATTG GGATTGATCC AAAAGTTTTC GTTATTTATT        420
GGAAATTCAG ATTTTTTCGA TTCAGTTCCA TTTGAACTAG TAAGTCAAAC AAAATCTCTA        480
GATTTACTGA TCTGGGGTTT ATACTTTGAA GCTTGAGTTG TTGTTGTTTT ATTAATTTAT        540
TTCGATTTTC AGTAATATCC ATTTGTAGGT TTTGGTCTCT GACTCTTGTT TATAATAAAA        600
GCTCTGTATT GAGTAAAATC TCATGAAAGT AGGTTTCCTT TCCCTTTTTT ATCCTTCTCC        660
TTTGGTTATT AATCTCCTAC AACCTTTTTT TAGAAATTAC TACCTATATT CAGAAAGATT        720
CCATCTATTT CTTCTTCAAG GCTTGCTTTT TTGAACCAAA AGTCTCTCTC TTTTTCATCT        780
AATAATTTGT TTACTTTTTT GGACAGCAGA AAGTTGATTT GGTCAGAGCC AAGGAAGATG        840
GGTTACATGT GTGACTTCTG TGGTGAACAA AGATCTATGG TGTACTGTCG ATCCGATGCA        900
GCTTGTTTGT GTCTCTCCTG TGACCGGAGT GTTCATTCCG CTAATGCATT GTCCAAACGA        960
CATTCTCGGA CACTTGTCTG CGAGAGATGC AATGCTCAGC CTGCTACTGT CAGGTGTGTT       1020
GAAGAAAGGG TTTCACTCTG TCAAAACTGT GACTGGTCTG GCCACAACAA CAGCAACAAC       1080
AACAATTCTT CGTCTTCTTC TACTTCGCCG CAGCAGCATA AGAGGCAAAC CATAAGTTGC       1140
TATTCGGGTT GCCCTTCCAG CTCAGAACTC GCTTCCATTT GGTCTTTCTG TTTGGACTTA       1200
GCTGGACAAT CTATTTGTGA ACAAGAACTG GGTATGATGA ATATAGACGA TGATGGTCCT       1260
ACCGACAAGA AAACTTGTAA TGAGGATAAG AAAGATGTCT TGGTTGGATC CTCTTCAATT       1320
CCTGAAACCA GTTCTGTACC ACAAGGAAAA TCATCTTCTG CTAAGGTAAC TTTTTTTCTC       1380
AATATGTTAT TACTTTTGCA TCCATGGATA TACATATCTA TCATTTCTTT ACTAAATTCA       1440
GAGTTGTTGT TTGTTTTGGT TTAAAGGATG TTGGAATGTG TGAAGATGAC TTCTACGGGA       1500
ACCTTGGTAT GGATGAAGTT GACATGGCAC TTGAGAACTA TGAAGAACTC TTTGGTACCG       1560
CCTTTAACCC CTCTGAAGAG CTATTCGGGC ATGGTGGAAT CGATAGCCTT TTCCATAAGC       1620
ACCAAACAGC TCCAGAGGTT TTTATCCATT ACCCTTTCTT CTTAGATTTA TCAAATTGGA       1680
TGCATCTCTG TGTGATTCTA ATAATGCTCT CTTGTTTTTG CTCAATCCAG GGAGGGAATT       1740
CGGTGCAGCC AGCAGGCAGT AATGATTCGT TCATGAGTTC GAAAACTGAG CCAATAATTT       1800
GCTTCGCATC GAAGCCAGCA CATTCGAACA TATCCTTCTC TGGAGTCACT GGAGAAAGTA       1860
GTGCTGGAGA TTTCCAAGAA TGTGGTGCAT CATCTTCCAT ACAGCTCTCG GGGGAGCCAC       1920
CATGGTATCC TCCAACATTA CAGGATAACA ATGCCTGCTC ACATTCAGTA ACCCGTAATA       1980
ACGCAGTTAT GCGTTACAAG GAGAAGAAGA AGGCTCGCAA GTAAGTAGTA GTCTGAAACT       2040
GCAAATACAT GAGCATCATT GAAGTGAGTG CAGGATTTTC CTAATGTGAC TCTGGCTTCT       2100
TTTTTCTGGA AACAGGTTTG ATAAGAGAGT GAGGTATGCT TCCCGCAAAG CAAGAGCTGA       2160
TGTGAGACGG CGTGTAAAGG GGCGATTTGT CAAAGCTGGT GAAGCTTATG ATTACGACCC       2220
TCTCACCCCA ACCAGAAGTT ATTGAAGACT CCTTTTGAAA GGTACATAGA TATATATACA       2280
TGGCGAAGAA TCGAACAAGA AAGGTTTTGA CTTATGGGCA GTTTCAAGTG AGCAACTTGG       2340
AAAATTGTGG GTTAGTAACA AAACAAGACT ACTGTAGCAT GAACAGATTT CAAGACTGAC       2400
TCTTGTAAGC AATCATTCAT TCTTGGGATT CAATCGTTTT TTTTGGCCTC AGAAGCTTCA       2460
TTCTTGACCA GAGGGATTAT TCTCTGACTT TCCTTGTCCA AACTCCGGTT TCTTCTTCTT       2520
CTTCTTCAGG CGTCTCACAC TGATCAGGGT TCCATGAATT TTGTTCTTCT CTTGGTAGTT       2580
AAAAAGGCAG GGAAGGAGAT TTAGAGTAAT TTAAACAATA TGTGATTGTT GTATATGCCT       2640
TTGTATTTGT TTGTATACTC ATAAATGTTT TTCTGTTTTG TACTCGGCAT TCTTGTAAAT       2700
TAAAGACATT ATCCACATTC TTCTATAGAC AAAGAAAGTT ATGTGGTACC ACTTAACCTA       2760
AGTCTCGTTC TGTAACAACC GACTAGTACT AGTTCAAGTT TAACGAGATT TTGGTTTGTA       2820
GTAACTTCAA GAGGTTGATC CAACAATGAG GCAATGCAAA ACATCTGAAC TTTATT           2876

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