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Sample: AF146269_at  (Affymetrix GeneChip: Hordeum vulgare Genome Barley1 Array Feature)

Genotype (Genotype)
  species: Hordeum vulgare
  type: wildtype
  common name: barley

Gene function:
(AF146269) resistance gene analog PIC22 [Oryza sativa] (MapMan)

Gene Ontology
GO termIdentifierType
ATP bindingGO:0005524molecular function
apoptosisGO:0006915biological process
defense responseGO:0006952biological process
MapMan Annotation:
BIN  20.1: stress.biotic
BIN  20: stress

Sample information:
analysis GabiPD: Affymetrix feature represented by 11 oligos. Following genes hybridize with at least 5 oligos (number given in brackets): LOC_Os04g02110.2 (11), LOC_Os04g02110.3 (11), LOC_Os04g02110.1 (11).

Related with
LOC_Os04g02110.3 annotated gene (MSU6.1)
LOC_Os04g02110.2 annotated gene (MSU6.1)
LOC_Os04g02110.1 annotated gene (MSU6.1)
 
Sequence: AF146269_at
submitter of sequence: public data
length: 888
description: BEST BLASTX NR: 11/06/02 AAF21362.1 e-156 (AF146269) resistance gene analog PIC22 [Oryza sativa] 
AF146269_at
ggggttggga agaccacact cgccaagtta gtctatgatg atgccaaggt taagcagcat         60
ttcgagctca ggctctgggc gagtgtctct actagtggag ggtttcacaa aattgacatc        120
accgaacaaa tcttgcgttc agccaaccca acataccctg cttctattca cagtgaacct        180
acgcttgaca tgcttcagtt ccatctcagc caactggtag cgtccaagag attcttgctt        240
gttctcgatg acatcaggga ggagtccttc accagcatgg cctgccaaga gatcctcagt        300
cctctatcat cggcagaaaa ggggagcaga attctggtga ctactacaac agcctcagtg        360
cctgccatgc tgggggcatc ttgtacatac cacctgaatg tattggacat cgaggatttg        420
tggtccttgc tcaagaaata tgctttccat ggaggcccaa ctcatgattc cacccaggag        480
cttgaagaaa ttgggaggaa catcgcatcc aagctcaaag gattgccatt ggctgccaag        540
atgcttgggg ggctgcttgg agctacaaag agcacaaaga cctggatgaa tgtcttggac        600
aaagaacttt atggcgatag tattcttccc gtactagaat tgagttacag ttacctgcct        660
cgacgactca agcagtgctt ttcgttctgc agtttgtttc cgaggaacta taaatttaac        720
aaaagagtgt tgatccaact ttggatggcc caaggttttg ttcagtcaca gaacagtgct        780
gacaaaaata tggaggacct ggcagaagat tattttgagg aacttctttc gcgatccttc        840
tttgatgtac gcagggaagc gtgtgaaaca cactacgtga tgcatgac                     888
TypePositionDescription
Oligo 296 - 320: TCAGTCCTCTATCATCGGCAGAAAA
Oligo 335 - 359: TGGTGACTACTACAACAGCCTCAGT
Oligo 375 - 399: GGCATCTTGTACATACCACCTGAAT
Oligo 414 - 438: GGATTTGTGGTCCTTGCTCAAGAAA
Oligo 437 - 461: AATATGCTTTCCATGGAGGCCCAAC
Oligo 494 - 518: GGAGGAACATCGCATCCAAGCTCAA
Oligo 610 - 634: TATGGCGATAGTATTCTTCCCGTAC
Oligo 640 - 664: TTGAGTTACAGTTACCTGCCTCGAC
Oligo 683 - 707: CGTTCTGCAGTTTGTTTCCGAGGAA
Oligo 745 - 769: ATGGCCCAAGGTTTTGTTCAGTCAC
Oligo 828 - 852: TTCGCGATCCTTCTTTGATGTACGC
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