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Gene: LOC_Os01g11550.1


  Alternative name:LOC_Os01g11550
  Alternative name:12001.m07772

Genotype (Genotype)
  species: Oryza sativa japonica
  name: (Japanese rice)
  type: wildtype

Gene function:
mutant cincinnata, putative, expressed (TIGR 5.0)

Gene Ontology
GO termIdentifierType
transcriptionGO:0006350biological process
transcription factor activityGO:0003700molecular function

Related with
HZ01O15 cDNA clone

Orthologues and co-orthologues identified by INPARANOID
AT3G15030.2 Arabidopsis thaliana
AT3G15030.1 Arabidopsis thaliana

External resources
Michigan State University - Rice Genome Annotation
Aramemnon
Gramene
PlnTFDB
MapCave
iHOP (LOC_Os01g11550)
iHOP (12001.m07772)
 
Sequence: LOC_Os01g11550.1
submitter of sequence: public data
length: 1377
description: coding sequence (TIGR 5.0)
LOC_Os01g11550.1
ATGGGCGACG CCGGCGGCCA CTCCCACCAC CACCAACACG GCTTCCAGCC TCAGCTCCTC         60
TCCTTCGGTG GCGTCGGCCA CCACCACCAC CTGCATCAGT TCACGGCGCA GCCACAGCCC        120
CCCGCCGCGT CCCACACTCG GGGTCGTGGA GGTGGAGGTG AGATTGTCCC CGCGACGACA        180
ACTCCACGGT CGAGGGGCGG AGGCGGCGGC GGCGGCGGGG AGATCGTGGC GGTGCAGGGC        240
GGGCACATTG TGCGGTCGAC AGGGCGGAAG GACCGGCACA GCAAGGTCTG CACGGCGCGC        300
GGGCCGCGCG ACCGCCGCGT GCGGCTGTCG GCGCACACCG CCATCCAGTT CTACGACGTG        360
CAGGACCGGC TGGGCTACGA CCGCCCGAGC AAGGCGGTGG ACTGGCTCAT CAAGAACGCC        420
AAGGACGCCA TCGACAAGCT CGACGTGCTG CCGGCGTGGC AGCCCACTGC CGGCGGCGCA        480
GGCGCGGGCA ATGCCGCCGC GCCGCCGTCC TCCTCGACCC ACCCCGACTC CGCCGAGAAC        540
TCCGACGACC AGGCGCAGGC CATCACCGTC GCGCACACCG CCTTCGACTT CGCCGGCGGG        600
GGCAGCGGCG GGACCAGCTT CCTCCCGCCG TCGCTCGACT CGGACGCCAT AGCCGACACG        660
ATCAAGTCCT TCTTCCCCAT GGGTGGCACC GCAGGCGGGG AGGCATCGTC GTCCACCACG        720
GCGGCGCAGT CGTCGGCCAT GGGTTTCCAG AGCTACACGC CTGACCTCCT GTCCCGCACC        780
GGCAGCCAGA GCCAGGAGCT CCGGCTGTCG CTGCAGTCCT TACCAGACCC CATGTTCCAC        840
CACCAGCAAC ATCGCCATGG CGGCGGCGGC GGCGGCGGCA ATGGCACCAC GCAGCAGGCG        900
CTCTTCTCCG GCGCCGCCAA TTACTCGTTC GGCGGCGGAG CCATGTGGGC CACCGAGCAG        960
CAGGCGCAGA ACCAGCGCAT GCTGCCGTGG AACGTGCCCG ACCCCGGCGG CGGCGGCGGC       1020
GCCGCCTACC TGTTCAACGT GTCGCAGCAA GCGGCGCATA TGCAGGCGGC GGCTGCGGCG       1080
CTGGGTGGCC ACCAGAGCCA GTTCTTCTTC CAGAGGGGAC CCCTTCAGTC CAGTAACCAG       1140
CCCTCCGAGC GAGGATGGCC GGAGACCGTC GAAGCCGACA ACCAGATGAG CCACCACCAA       1200
GGAGGGCTGA GCCCCTCCGT GTCGGCGGCC ATCGGTTTTG CCGCTCCCGG CATCGGCTTC       1260
TCCGGCTTCC GCCTCCCCGC GAGGATACAG GGCGACGAGG AGCACAACGG CGGCGGCGGC       1320
GGCAATGGCG ACAAGCCGCC GCCGCCGTCG TCTGTCTCCT CGGCTTCTCA CCACTGA          1377
 
Sequence: LOC_Os01g11550.1
submitter of sequence: public data
length: 2471
description: cdna sequence (TIGR 5.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
LOC_Os01g11550.1
TCTCTCTCTC CTCACTAAAG CACAAATCCT ACTCTTATCA TCCTGTCTTC TTGCCTCCCT         60
TCTGCCTCCT GCTCACCAAG CTTCCCACAC AAACCCAACA AGAGAGTGAG AGAGGAGCAA        120
AAGCTTTGGC TGGCCGTCCC CCCTGTTAAA ATGTGATGTC CAATCCATGG GATTGCGTCT        180
AGTTTAGTCC CCCACTCCTC TCCTGGTTAT GGGATCCGGC GAGGTGGATG GACGCGCATT        240
GGAGCAGCAA CAGTAGCGGC GGGGAAGAAG GCGGCGGGGG ATCTGGATCC GAGGCACCAC        300
CACCACCGGG TCACCCACGG CGGCGACGGC GGCGGCGTAG GAGGAGGAGG AAGCGGGGGA        360
CAGGAGGAGG CAGATGAGCA GCAGCAGCAG CAGCACGACC ACCACCGGCT TCTCCAGCTC        420
CACCACCACC AGGGTGTGCA GCAGGACCAA GAACCGCCGC CTGTTCCCGT CTTCCACCTC        480
CAGCCGGCGT CCGTGAGGCA GCTGTCGGGC TCCTCCGCCG AGTATGCCCT TCTCTCGCCC        540
ATGGGCGACG CCGGCGGCCA CTCCCACCAC CACCAACACG GCTTCCAGCC TCAGCTCCTC        600
TCCTTCGGTG GCGTCGGCCA CCACCACCAC CTGCATCAGT TCACGGCGCA GCCACAGCCC        660
CCCGCCGCGT CCCACACTCG GGGTCGTGGA GGTGGAGGTG AGATTGTCCC CGCGACGACA        720
ACTCCACGGT CGAGGGGCGG AGGCGGCGGC GGCGGCGGGG AGATCGTGGC GGTGCAGGGC        780
GGGCACATTG TGCGGTCGAC AGGGCGGAAG GACCGGCACA GCAAGGTCTG CACGGCGCGC        840
GGGCCGCGCG ACCGCCGCGT GCGGCTGTCG GCGCACACCG CCATCCAGTT CTACGACGTG        900
CAGGACCGGC TGGGCTACGA CCGCCCGAGC AAGGCGGTGG ACTGGCTCAT CAAGAACGCC        960
AAGGACGCCA TCGACAAGCT CGACGTGCTG CCGGCGTGGC AGCCCACTGC CGGCGGCGCA       1020
GGCGCGGGCA ATGCCGCCGC GCCGCCGTCC TCCTCGACCC ACCCCGACTC CGCCGAGAAC       1080
TCCGACGACC AGGCGCAGGC CATCACCGTC GCGCACACCG CCTTCGACTT CGCCGGCGGG       1140
GGCAGCGGCG GGACCAGCTT CCTCCCGCCG TCGCTCGACT CGGACGCCAT AGCCGACACG       1200
ATCAAGTCCT TCTTCCCCAT GGGTGGCACC GCAGGCGGGG AGGCATCGTC GTCCACCACG       1260
GCGGCGCAGT CGTCGGCCAT GGGTTTCCAG AGCTACACGC CTGACCTCCT GTCCCGCACC       1320
GGCAGCCAGA GCCAGGAGCT CCGGCTGTCG CTGCAGTCCT TACCAGACCC CATGTTCCAC       1380
CACCAGCAAC ATCGCCATGG CGGCGGCGGC GGCGGCGGCA ATGGCACCAC GCAGCAGGCG       1440
CTCTTCTCCG GCGCCGCCAA TTACTCGTTC GGCGGCGGAG CCATGTGGGC CACCGAGCAG       1500
CAGGCGCAGA ACCAGCGCAT GCTGCCGTGG AACGTGCCCG ACCCCGGCGG CGGCGGCGGC       1560
GCCGCCTACC TGTTCAACGT GTCGCAGCAA GCGGCGCATA TGCAGGCGGC GGCTGCGGCG       1620
CTGGGTGGCC ACCAGAGCCA GTTCTTCTTC CAGAGGGGAC CCCTTCAGTC CAGTAACCAG       1680
CCCTCCGAGC GAGGATGGCC GGAGACCGTC GAAGCCGACA ACCAGATGAG CCACCACCAA       1740
GGAGGGCTGA GCCCCTCCGT GTCGGCGGCC ATCGGTTTTG CCGCTCCCGG CATCGGCTTC       1800
TCCGGCTTCC GCCTCCCCGC GAGGATACAG GGCGACGAGG AGCACAACGG CGGCGGCGGC       1860
GGCAATGGCG ACAAGCCGCC GCCGCCGTCG TCTGTCTCCT CGGCTTCTCA CCACTGACCG       1920
CAGCAGTGGC GAGCAGATGA CTTCACCACC ACCAATCCAC CATGAGCAAA CACCACACCA       1980
TGTACCAGAC TATCAGCTAG CTCCTCCACT TCCATCACGG AATTGTCGAT TGCATTCGGG       2040
AGGAGCAAAG TTTGGAGGTA GCACAAGTGC ACTACTACTG ATGCTACTAC ATATCGGTTG       2100
GTTGGTTGGT TGGTTTTCCA TCGATCTCTT CTGCTGCTGC GCATGTCATT GGTTTTTGTT       2160
TCAAGAATTC ACTCGGAGCT TCTTAGAATT AGGCTTGTGA GAATGCAGCA ACACGATGGC       2220
AAGCTTTAGC TTAGCTTAGC AAGCCTCTGT GTCTGTTGGC TGTTGCGTTG CGCTAGGTGT       2280
AGTTGATCGA TGTAGGTTCG AGCTTGCTTT GCTTTGTTTT GATTTTTACT CTTTTGTTGC       2340
TGATGCATGG ACATGCTTTT GCTTCCTCCT GTGGGTTCAG GAGCAGTTGC TACTAGACCG       2400
ATGTTGTTCT CAAAACTGAT AAGTGGGATG GTGATGGATT GGGAGAGGAG CCTATCTTTC       2460
ATCTTTTCCA A                                                            2471
 
Sequence: LOC_Os01g11550
submitter of sequence: public data
length: 2692
description: genomic sequence (TIGR 5.0)
LOC_Os01g11550
TCTCTCTCTC CTCACTAAAG CACAAATCCT ACTCTTATCA TCCTGTCTTC TTGCCTCCCT         60
TCTGCCTCCT GCTCACCAAG CTTCCCACAC AAACCCAACA AGAGAGTGAG AGAGGAGCAA        120
AAGCTTTGGC TGGCCGTCCC CCCTGTTAAA ATGTGATGTC CAATCCATGG GATTGCGTCT        180
AGTTTAGTCC CCCACTCCTC TCCTGGGTCA GTCCCTCCCT GGCCACCACC TCTTCTTCTT        240
GCAGCCTCCT CCTCCTCCGG GGCCTTCTTC TTGTTGATTC TTTTGATGGT TTTTGTGTTT        300
CTTGTCGACC TAGTTATGGG ATCCGGCGAG GTGGATGGAC GCGCATTGGA GCAGCAACAG        360
TAGCGGCGGG GAAGAAGGCG GCGGGGGATC TGGATCCGAG GCACCACCAC CACCGGGTCA        420
CCCACGGCGG CGACGGCGGC GGCGTAGGAG GAGGAGGAAG CGGGGGACAG GAGGAGGCAG        480
ATGAGCAGCA GCAGCAGCAG CACGACCACC ACCGGCTTCT CCAGCTCCAC CACCACCAGG        540
GTGTGCAGCA GGACCAAGAA CCGCCGCCTG TTCCCGTCTT CCACCTCCAG CCGGCGTCCG        600
TGAGGCAGCT GTCGGGCTCC TCCGCCGAGT ATGCCCTTCT CTCGCCCATG GGCGACGCCG        660
GCGGCCACTC CCACCACCAC CAACACGGCT TCCAGCCTCA GCTCCTCTCC TTCGGTGGCG        720
TCGGCCACCA CCACCACCTG CATCAGTTCA CGGCGCAGCC ACAGCCCCCC GCCGCGTCCC        780
ACACTCGGGG TCGTGGAGGT GGAGGTGAGA TTGTCCCCGC GACGACAACT CCACGGTCGA        840
GGGGCGGAGG CGGCGGCGGC GGCGGGGAGA TCGTGGCGGT GCAGGGCGGG CACATTGTGC        900
GGTCGACAGG GCGGAAGGAC CGGCACAGCA AGGTCTGCAC GGCGCGCGGG CCGCGCGACC        960
GCCGCGTGCG GCTGTCGGCG CACACCGCCA TCCAGTTCTA CGACGTGCAG GACCGGCTGG       1020
GCTACGACCG CCCGAGCAAG GCGGTGGACT GGCTCATCAA GAACGCCAAG GACGCCATCG       1080
ACAAGCTCGA CGTGCTGCCG GCGTGGCAGC CCACTGCCGG CGGCGCAGGC GCGGGCAATG       1140
CCGCCGCGCC GCCGTCCTCC TCGACCCACC CCGACTCCGC CGAGAACTCC GACGACCAGG       1200
CGCAGGCCAT CACCGTCGCG CACACCGCCT TCGACTTCGC CGGCGGGGGC AGCGGCGGGA       1260
CCAGCTTCCT CCCGCCGTCG CTCGACTCGG ACGCCATAGC CGACACGATC AAGTCCTTCT       1320
TCCCCATGGG TGGCACCGCA GGCGGGGAGG CATCGTCGTC CACCACGGCG GCGCAGTCGT       1380
CGGCCATGGG TTTCCAGAGC TACACGCCTG ACCTCCTGTC CCGCACCGGC AGCCAGAGCC       1440
AGGAGCTCCG GCTGTCGCTG CAGTCCTTAC CAGACCCCAT GTTCCACCAC CAGCAACATC       1500
GCCATGGCGG CGGCGGCGGC GGCGGCAATG GCACCACGCA GCAGGCGCTC TTCTCCGGCG       1560
CCGCCAATTA CTCGTTCGGC GGCGGAGCCA TGTGGGCCAC CGAGCAGCAG GCGCAGAACC       1620
AGCGCATGCT GCCGTGGAAC GTGCCCGACC CCGGCGGCGG CGGCGGCGCC GCCTACCTGT       1680
TCAACGTGTC GCAGCAAGCG GCGCATATGC AGGCGGCGGC TGCGGCGCTG GGTGGCCACC       1740
AGAGCCAGTT CTTCTTCCAG AGGGGACCCC TTCAGTCCAG TAACCAGCCC TCCGAGCGAG       1800
GATGGCCGGA GACCGTCGAA GCCGACAACC AGATGAGCCA CCACCAAGGA GGGCTGAGCC       1860
CCTCCGTGTC GGCGGCCATC GGTTTTGCCG CTCCCGGCAT CGGCTTCTCC GGCTTCCGCC       1920
TCCCCGCGAG GATACAGGGC GACGAGGAGC ACAACGGCGG CGGCGGCGGC AATGGCGACA       1980
AGCCGCCGCC GCCGTCGTCT GTCTCCTCGG CTTCTCACCA CTGACCGCAG CAGTGGCGAG       2040
CAGATGACTT CACCACCACC AATCCACCAT GAGCAAACAC CACACCATGT ACCAGACTAT       2100
CAGCTAGCTC CTCCACTTCC ATCACGGTGA GAAAAAAAAA CCGAGAATTC TCATGGCTAA       2160
CCTGCATTAG TTCAGAATTT TTCTCGTGTT AGTTAGCTGA TCAATCTTGT GCTGCTGGTT       2220
TTGGTGTTCT TGACATGCAG GAATTGTCGA TTGCATTCGG GAGGAGCAAA GTTTGGAGGT       2280
AGCACAAGTG CACTACTACT GATGCTACTA CATATCGGTT GGTTGGTTGG TTGGTTTTCC       2340
ATCGATCTCT TCTGCTGCTG CGCATGTCAT TGGTTTTTGT TTCAAGAATT CACTCGGAGC       2400
TTCTTAGAAT TAGGCTTGTG AGAATGCAGC AACACGATGG CAAGCTTTAG CTTAGCTTAG       2460
CAAGCCTCTG TGTCTGTTGG CTGTTGCGTT GCGCTAGGTG TAGTTGATCG ATGTAGGTTC       2520
GAGCTTGCTT TGCTTTGTTT TGATTTTTAC TCTTTTGTTG CTGATGCATG GACATGCTTT       2580
TGCTTCCTCC TGTGGGTTCA GGAGCAGTTG CTACTAGACC GATGTTGTTC TCAAAACTGA       2640
TAAGTGGGAT GGTGATGGAT TGGGAGAGGA GCCTATCTTT CATCTTTTCC AA               2692
 
Sequence: LOC_Os01g11550.1
submitter of sequence: public data
length: 458
description: amino acid sequence (TIGR 5.0)
LOC_Os01g11550.1
MGDAGGHSHH HQHGFQPQLL SFGGVGHHHH LHQFTAQPQP PAASHTRGRG GGGEIVPATT         60
TPRSRGGGGG GGGEIVAVQG GHIVRSTGRK DRHSKVCTAR GPRDRRVRLS AHTAIQFYDV        120
QDRLGYDRPS KAVDWLIKNA KDAIDKLDVL PAWQPTAGGA GAGNAAAPPS SSTHPDSAEN        180
SDDQAQAITV AHTAFDFAGG GSGGTSFLPP SLDSDAIADT IKSFFPMGGT AGGEASSSTT        240
AAQSSAMGFQ SYTPDLLSRT GSQSQELRLS LQSLPDPMFH HQQHRHGGGG GGGNGTTQQA        300
LFSGAANYSF GGGAMWATEQ QAQNQRMLPW NVPDPGGGGG AAYLFNVSQQ AAHMQAAAAA        360
LGGHQSQFFF QRGPLQSSNQ PSERGWPETV EADNQMSHHQ GGLSPSVSAA IGFAAPGIGF        420
SGFRLPARIQ GDEEHNGGGG GNGDKPPPPS SVSSASHH                                458

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