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Gene: AT5G22440.2


  Alternative name:AT5G22440

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
60S ribosomal protein L10A (RPL10aC) (TAIR 7.0)
60S ribosomal protein L10A (RPL10aC) Identical to 60S ribosomal protein L10a-3 (RPL10AC) [Arabidopsis Thaliana] (GB:P59231;GB:P53029;GB:Q9FMQ7); similar to 60S ribosomal protein L10A (RPL10aA) [Arabidopsis thaliana] (TAIR:AT1G08360.1); similar to putative 60S ribosomal protein L10A (RPL10aC) [Oryza sativa (japonica cultivar-group)] (GB:BAD09090.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) (MapMan)

Gene Ontology
GO termIdentifierType
structural constituent of ribosomeGO:0003735molecular function
cytosolic large ribosomal subunitGO:0022625cellular component
translationGO:0006412biological process
cytosolic ribosomeGO:0022626cellular component
ribosomeGO:0005840cellular component
MapMan Annotation:
BIN  29.2.2: protein.synthesis.misc ribososomal protein
BIN  29.2: protein.synthesis
BIN  29: protein

Related with
MPIZp772C152Q cDNA clone
MPIZp769J142Q cDNA clone
MPIZp2000F042Q cDNA clone
MPIZp2001F131Q cDNA clone
MPIZp2001J132Q cDNA clone
MPIZp2001L142Q cDNA clone
MPIZp770A1301Q cDNA clone
MPIZp770A131Q cDNA clone
248A5T7 cDNA clone
MSU_p955B1926 cDNA clone
MSU_p955N1811 cDNA clone
MPIZp769M163Q cDNA clone
147K15T7 cDNA clone
MSU_p955O148 cDNA clone
MPIZp2000F092Q cDNA clone
MSU_p955D1224 cDNA clone
MPIZp2000C062Q cDNA clone
LB_Hor1_C8 cDNA clone
308E05 T-DNA Line
764G03 T-DNA Line
249945_at Affymetrix representative on ATH1-121501
MPIZp1022N0121Q cDNA clone
MPIZp1022E035Q cDNA clone
MPIZp1022A0710Q cDNA clone
MPIZp1022F072Q cDNA clone
MPIZp1022M181Q cDNA clone

Orthologues and co-orthologues identified by INPARANOID
AT1G08360.1 Arabidopsis thaliana
AT5G22440.1 Arabidopsis thaliana
LOC_Os01g64090.1 Oryza sativa japonica
LOC_Os08g44380.2 Oryza sativa japonica

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
MapCave
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
SLocX
iHOP (AT5G22440)
 
Sequence: AT5G22440.2
submitter of sequence: public data
length: 218
description: amino acid sequence (TAIR 7.0) 
AT5G22440.2
MSKLQSEAVR EAISSIITHC KETKPRNFTE TIELQIGLKN YDPQKDKRFS GSVKLPHVPR         60
PKMKICMLGD AQHVEEAEKI GLESMDVEAL KKLNKNKKLV KKLAKKFHAF LASESVIKQI        120
PRLLGPGLNK AGKFPTLVSH QESLESKVNE TKATVKFQLK KVLCMGVAVG NLSMEEKQIF        180
QNVQMSVNFL VSLLKKNWQN VRCLYLKSTM GPPNRVF*                                218
 
Sequence: AT5G22440.2
submitter of sequence: public data
length: 1072
description: cdna sequence (TAIR 7.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
AT5G22440.2
CTTTCTCTGT TTCCGACCTT CCCACAGGTA AATCAATCAT CTTCTTCAAT ACTTTTGTCT         60
TTCCGTCCAT CGGAGGATTC TCAATACGTT TCGTTACAAC ACTGTTAAAT CTCATTTTCC        120
TGAATCTCCG TTTACAGGAA GCAAATTTGT TTCAGGGAGT ACCAAAATGA GTAAGCTTCA        180
GAGTGAAGCC GTGAGAGAGG CAATAAGCTC CATTATCACT CACTGTAAGG AGACAAAGCC        240
ACGCAACTTC ACTGAGACTA TTGAACTCCA GATTGGTCTC AAGAACTATG ACCCTCAAAA        300
GGACAAGAGA TTTAGCGGTT CTGTGAAATT GCCTCACGTT CCTAGGCCAA AGATGAAGAT        360
TTGCATGCTT GGTGATGCCC AGCACGTCGA AGAGGCTGAG AAGATTGGAT TGGAATCTAT        420
GGATGTTGAA GCTCTTAAGA AGTTGAACAA GAACAAGAAA CTTGTTAAGA AGCTTGCTAA        480
GAAATTCCAT GCTTTCCTTG CTTCTGAATC TGTCATTAAG CAGATTCCTC GTCTTCTTGG        540
TCCTGGTCTC AACAAGGCAG GAAAATTCCC AACTCTTGTT AGCCACCAAG AGTCTTTGGA        600
ATCCAAAGTG AATGAGACAA AGGCAACAGT GAAGTTCCAG CTCAAGAAGG TTCTATGTAT        660
GGGAGTTGCT GTCGGTAATC TTTCCATGGA GGAGAAGCAG ATCTTTCAAA ATGTTCAGAT        720
GAGTGTTAAC TTCCTCGTTT CTCTCTTGAA GAAAAACTGG CAAAATGTGA GGTGCTTGTA        780
CTTGAAGAGC ACAATGGGTC CACCAAACCG AGTTTTCTAA GGTTATTATT ATTACAAAGT        840
TTCTCTAAGG TATCATCACT CTTTAGGAAA TTTGATTTTC TTTTGCTGTC ATGAGCCTTC        900
TTCTTGTTGG GTTAAACTTC AAATTCCAGT ATCCCGACTT TTGTAGGATC AAGATTTTTT        960
TTAAAGACAA TTTTGTTTCT TTTGTTGCTA TTATTATTAG TGGATTTTTT CTCCATTTAA       1020
GCACTCAAAT TTTGCTATCT TTGTTATCAT CAATATCATT TAAGTTTGTC TT               1072
SNPleft flanking [allel] right flanking
SNP247222 TTAGCGGTTC[T/T]GTGAAATTGC
SNP247220 CTGAGAAGAT[T/T]GGATTGGAAT
SNP247218 CTTTCCTTGC[T/T]TCTGAATCTG
 
Sequence: AT5G22440.2
submitter of sequence: public data
length: 1577
description: genomic sequence (TAIR 7.0) 
AT5G22440.2
CTTTCTCTGT TTCCGACCTT CCCACAGGTA AATCAATCAT CTTCTTCAAT ACTTTTGTCT         60
TTCCGTCCAT CGGAGGATTC TCAATACGTT TCGTTACAAC ACTGTTAAAT CTCATTTTCC        120
TGAATCTCCG TTTACAGGAA GCAAATTTGT TTCAGGGAGT ACCAAAATGA GGTTTGTTTA        180
CTCAAATCAA CTTTATTTTG TTTTCTGCTA ATGATTCAGA TGAATGTTGA TTTGGTATAA        240
TGGTAGATAG GATTTGAGGT GAAAAAGTTT GATTCTTTAT ACAAAAAACT ATTGGTCATT        300
GATTGTTTTC ATGAGGAGGG AACAAAAGTT GTTGATTTCA TAGTAATGAT CTTGTTGTCA        360
TTTTGGGTTT ATAGAAAGGT TACAAATTTG AGTTTTTTTT AATGGTGTAG TAAGCTTCAG        420
AGTGAAGCCG TGAGAGAGGC AATAAGCTCC ATTATCACTC ACTGTAAGGA GACAAAGCCA        480
CGCAACTTCA CTGAGACTAT TGAACTCCAG ATTGGTCTCA AGAACTATGA CCCTCAAAAG        540
GACAAGAGAT TTAGCGGTTC TGTGAAATTG CCTCACGTTC CTAGGCCAAA GATGAAGATT        600
TGCATGCTTG GTGATGCCCA GCACGTCGAA GAGGTTCACT TTTTTCCGCC TTTTCTTTTG        660
AAAATGTTAT GATTAGTACT TAGTAGTATA GTACTATAAC TTGCGGTTGG TTTACTTAGG        720
CTGAGAAGAT TGGATTGGAA TCTATGGATG TTGAAGCTCT TAAGAAGTTG AACAAGAACA        780
AGAAACTTGT TAAGAAGCTT GCTAAGAAAT TCCATGCTTT CCTTGCTTCT GAATCTGTCA        840
TTAAGCAGAT TCCTCGTCTT CTTGGTCCTG GTCTCAACAA GGCAGGCATG TCTCTAACCT        900
TACCTAATCT TTGCATATGT TCTTGTATCC TCTCTATATG ATGCTACATT AAATCTTGAC        960
TCTTATGAAC AATGAACAGG AAAATTCCCA ACTCTTGTTA GCCACCAAGA GTCTTTGGAA       1020
TCCAAAGTGA ATGAGACAAA GGCAACAGTG AAGTTCCAGC TCAAGAAGGT TCTATGTATG       1080
GGAGTTGCTG TCGGTAATCT TTCCATGGAG GAGAAGCAGA TCTTTCAAAA TGTTCAGATG       1140
AGTGTTAACT TCCTCGTTTC TCTCTTGAAG AAAAACTGGC AAAATGTTAG TAACAACACC       1200
CTCTTGAACT TCTCGATCTT TCTCCATACA TTTATCAGTA TCTAAAACCT GAGTTGTTCC       1260
TTTGACTGCA GGTGAGGTGC TTGTACTTGA AGAGCACAAT GGGTCCACCA AACCGAGTTT       1320
TCTAAGGTTA TTATTATTAC AAAGTTTCTC TAAGGTATCA TCACTCTTTA GGAAATTTGA       1380
TTTTCTTTTG CTGTCATGAG CCTTCTTCTT GTTGGGTTAA ACTTCAAATT CCAGTATCCC       1440
GACTTTTGTA GGATCAAGAT TTTTTTTAAA GACAATTTTG TTTCTTTTGT TGCTATTATT       1500
ATTAGTGGAT TTTTTCTCCA TTTAAGCACT CAAATTTTGC TATCTTTGTT ATCATCAATA       1560
TCATTTAAGT TTGTCTT                                                      1577
 
Sequence: AT5G22440.2
submitter of sequence: public data
length: 654
description: coding sequence (TAIR 7.0) 
AT5G22440.2
ATGAGTAAGC TTCAGAGTGA AGCCGTGAGA GAGGCAATAA GCTCCATTAT CACTCACTGT         60
AAGGAGACAA AGCCACGCAA CTTCACTGAG ACTATTGAAC TCCAGATTGG TCTCAAGAAC        120
TATGACCCTC AAAAGGACAA GAGATTTAGC GGTTCTGTGA AATTGCCTCA CGTTCCTAGG        180
CCAAAGATGA AGATTTGCAT GCTTGGTGAT GCCCAGCACG TCGAAGAGGC TGAGAAGATT        240
GGATTGGAAT CTATGGATGT TGAAGCTCTT AAGAAGTTGA ACAAGAACAA GAAACTTGTT        300
AAGAAGCTTG CTAAGAAATT CCATGCTTTC CTTGCTTCTG AATCTGTCAT TAAGCAGATT        360
CCTCGTCTTC TTGGTCCTGG TCTCAACAAG GCAGGAAAAT TCCCAACTCT TGTTAGCCAC        420
CAAGAGTCTT TGGAATCCAA AGTGAATGAG ACAAAGGCAA CAGTGAAGTT CCAGCTCAAG        480
AAGGTTCTAT GTATGGGAGT TGCTGTCGGT AATCTTTCCA TGGAGGAGAA GCAGATCTTT        540
CAAAATGTTC AGATGAGTGT TAACTTCCTC GTTTCTCTCT TGAAGAAAAA CTGGCAAAAT        600
GTGAGGTGCT TGTACTTGAA GAGCACAATG GGTCCACCAA ACCGAGTTTT CTAA              654
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