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Gene: AT2G27530.2


  Alternative name:AT2G27530

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
60S ribosomal protein L10A (RPL10aB) (TAIR 7.0)
60S ribosomal protein L10A (RPL10aB) Identical to 60S ribosomal protein L10a-2 (RPL10AB) [Arabidopsis Thaliana] (GB:P59230;GB:P53029;GB:Q9C5M4;GB:Q9SLF8); similar to 60S ribosomal protein L10A (RPL10aA) [Arabidopsis thaliana] (TAIR:AT1G08360.1); similar to Ribosomal protein L1 [Medicago truncatula] (GB:ABE94025.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) (MapMan)

Gene Ontology
GO termIdentifierType
structural constituent of ribosomeGO:0003735molecular function
cytosolic large ribosomal subunitGO:0022625cellular component
translationGO:0006412biological process
post-embryonic organ developmentGO:0048569biological process
adaxial/abaxial pattern formationGO:0009955biological process
large ribosomal subunitGO:0015934cellular component
MapMan Annotation:
BIN  29.2.2: protein.synthesis.misc ribososomal protein
BIN  29.2: protein.synthesis
BIN  29: protein

Related with
MPIZp770E082Q cDNA clone
MPIZp772C152Q cDNA clone
MPIZp769J142Q cDNA clone
MPIZp2000F042Q cDNA clone
MPIZp2001F131Q cDNA clone
MPIZp2001J132Q cDNA clone
MPIZp2001L142Q cDNA clone
MPIZp770A1301Q cDNA clone
MPIZp770A131Q cDNA clone
248A5T7 cDNA clone
MSU_p955B1926 cDNA clone
MSU_p955N1811 cDNA clone
MSU_p955F1919 cDNA clone
MPIZp769M163Q cDNA clone
147K15T7 cDNA clone
MSU_p955O148 cDNA clone
MSU_p955O1827 cDNA clone
MSU_p955F0227 cDNA clone
MSU_p955D1224 cDNA clone
LB_Hor1_C8 cDNA clone
158D07 T-DNA Line
MPIZp2000F092Q cDNA clone
MPIZp2000C062Q cDNA clone
266210_at Affymetrix representative on ATH1-121501
MPIZp1022N0121Q cDNA clone
MPIZp1022E035Q cDNA clone
MPIZp1022A0710Q cDNA clone
MPIZp1022F072Q cDNA clone
MPIZp1022M181Q cDNA clone

Orthologues and co-orthologues identified by INPARANOID
AT1G08360.1 Arabidopsis thaliana
AT5G22440.1 Arabidopsis thaliana
AT5G22440.2 Arabidopsis thaliana
LOC_Os01g64090.1 Oryza sativa japonica
LOC_Os08g44380.2 Oryza sativa japonica

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
MapCave
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
SLocX
iHOP (AT2G27530)
 
Sequence: AT2G27530.2
submitter of sequence: public data
length: 217
description: amino acid sequence (TAIR 7.0)
AT2G27530.2
MSKLQSEAVR EAITTIKGKS EEKKRNFVET VELQIGLKNY DPQKDKRFSG SVKLPHIPRP         60
KMKICMLGDA QHVEEAEKMG LSNMDVEALK KLNKNKKLVK KLAKSYHAFL ASESVIKQIP        120
RLLGPGLNKA GKFPTLVSHQ ESLEAKVNET KATVKFQLKK VLCMGVAVGN LSMEEKQLFQ        180
NVQMSVNFLV SLLKKNWQNV RCLYLKSTMG PPQRIF*                                 217
 
Sequence: AT2G27530.2
submitter of sequence: public data
length: 963
description: cdna sequence (TAIR 7.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
AT2G27530.2
AGGTTTGTCT CTCTCCACAA ACATCGTCAC TTCTCATTTC GTCTTCTTCG TTCATCGATC         60
AGAGATTCGT GACCTGAGAA GACACTCAAT ATGAGTAAGC TTCAGAGTGA GGCTGTTAGA        120
GAAGCCATAA CGACTATCAA GGGAAAATCT GAGGAGAAGA AGCGTAACTT TGTTGAGACA        180
GTGGAGCTTC AGATTGGTCT GAAGAACTAT GACCCACAAA AGGATAAGCG TTTCAGTGGA        240
TCTGTGAAGC TCCCACATAT TCCTCGCCCA AAAATGAAGA TCTGTATGCT TGGAGATGCT        300
CAGCATGTTG AGGAGGCAGA GAAAATGGGA CTTAGTAACA TGGATGTTGA GGCTTTGAAA        360
AAGCTTAACA AGAACAAGAA GCTTGTTAAG AAGCTTGCTA AGTCTTACCA TGCTTTCTTG        420
GCTTCTGAGT CTGTCATTAA GCAGATTCCT CGTCTTCTTG GTCCTGGTCT TAACAAGGCA        480
GGAAAGTTCC CAACACTTGT GAGTCACCAA GAGTCATTGG AAGCAAAGGT GAATGAGACC        540
AAAGCAACAG TGAAGTTCCA GTTGAAGAAA GTTCTGTGTA TGGGTGTTGC TGTTGGTAAC        600
CTTTCCATGG AAGAGAAGCA GCTCTTCCAG AATGTGCAGA TGAGTGTTAA CTTCCTCGTC        660
TCGCTCTTGA AGAAGAATTG GCAAAACGTA AGGTGTTTGT ACTTGAAGAG CACCATGGGA        720
CCACCACAAA GAATCTTTTG AGCTCTCTCT TCTTATCCTT CTTCCATCTC AGAATTTTGC        780
ATTCTGTTTT TGTTTCAGAG ATCTGTGCTT GTTGGGATAT GGTTTGGATT TATATTAGCA        840
GTTGTTTTTT GTTGACAATA TATTATGCAA TATTCGTTTT AATTATCATA TTTTTTCTTT        900
ATCTCCTAAA ATATGATTTT GATTTCATCA GTTTGAAATT TTGTCTTTCA AACCTTAAAA        960
TTT                                                                      963
	      
SNPleft flanking [allel] right flanking
SNP259488 ATATTCCTCG[C/C]CCAAAAATGA
SNP259486 ACTTCCTCGT[C/C]TCGCTCTTGA
 
Sequence: AT2G27530.2
submitter of sequence: public data
length: 1549
description: genomic sequence (TAIR 7.0)
AT2G27530.2
AGGTTTGTCT CTCTCCACAA ACATCGTCAC TTCTCATTTC GTCTTCTTCG TTCATCGTAA         60
TTCCATGAAG TTTTTCGATT TCTCCTGCTT AATCTGAATT CTATGTCACA ATCGAAAATG        120
AGGTTTTTTT TTTTCTTTTT CTAATCGATC TCTTATTGTT TTCAGGATCA GAGATTCGTG        180
ACCTGAGAAG ACACTCAATA TGAGGTACTG TGAAAAAAAT CATTCCTTTA CGCTTCTTTC        240
AATCTCCATA TTGATCTATG TTCACTTGCT TTAGAATTAG TGTTGCCTTT AGATTGATAG        300
CTTGGAGAGT AATTGCTCAA CAGAATCATA TCATTTCAAA TGAATGGTAA AGTAGATTGC        360
TTTACCTGAT TTGGTGAAAT GGGTTTGTTT TTGTTATATA GTAAGCTTCA GAGTGAGGCT        420
GTTAGAGAAG CCATAACGAC TATCAAGGGA AAATCTGAGG AGAAGAAGCG TAACTTTGTT        480
GAGACAGTGG AGCTTCAGAT TGGTCTGAAG AACTATGACC CACAAAAGGA TAAGCGTTTC        540
AGTGGATCTG TGAAGCTCCC ACATATTCCT CGCCCAAAAA TGAAGATCTG TATGCTTGGA        600
GATGCTCAGC ATGTTGAGGA GGTGATTGAA ATCTCTATAC TTTTTGTGTA TCTTGTTTGG        660
TTTGAATTGG TGATTGACAC AAAGTGTTTG ATGTTTGTTT TGATAGGCAG AGAAAATGGG        720
ACTTAGTAAC ATGGATGTTG AGGCTTTGAA AAAGCTTAAC AAGAACAAGA AGCTTGTTAA        780
GAAGCTTGCT AAGTCTTACC ATGCTTTCTT GGCTTCTGAG TCTGTCATTA AGCAGATTCC        840
TCGTCTTCTT GGTCCTGGTC TTAACAAGGC AGGCGAGTTT CTTCAATAAC TTTGATACTT        900
GGTATATTAT ATGGTCATCA TTTAGTTTCG TTTTCAAGCT CTATGTCTGA GGTTTCTACT        960
TGTTTGATTG ATGAACAGGA AAGTTCCCAA CACTTGTGAG TCACCAAGAG TCATTGGAAG       1020
CAAAGGTGAA TGAGACCAAA GCAACAGTGA AGTTCCAGTT GAAGAAAGTT CTGTGTATGG       1080
GTGTTGCTGT TGGTAACCTT TCCATGGAAG AGAAGCAGCT CTTCCAGAAT GTGCAGATGA       1140
GTGTTAACTT CCTCGTCTCG CTCTTGAAGA AGAATTGGCA AAACGTATGA TTCTGTTTTG       1200
TTCCTATGAT TGTGTCTAAT TTCTTTCTAA ATCTCTCTCT AGTGTACTAA TTTTGATTTG       1260
GATCTTGATG CAGGTAAGGT GTTTGTACTT GAAGAGCACC ATGGGACCAC CACAAAGAAT       1320
CTTTTGAGCT CTCTCTTCTT ATCCTTCTTC CATCTCAGAA TTTTGCATTC TGTTTTTGTT       1380
TCAGAGATCT GTGCTTGTTG GGATATGGTT TGGATTTATA TTAGCAGTTG TTTTTTGTTG       1440
ACAATATATT ATGCAATATT CGTTTTAATT ATCATATTTT TTCTTTATCT CCTAAAATAT       1500
GATTTTGATT TCATCAGTTT GAAATTTTGT CTTTCAAACC TTAAAATTT                   1549
 
Sequence: AT2G27530.2
submitter of sequence: public data
length: 651
description: coding sequence (TAIR 7.0)
AT2G27530.2
ATGAGTAAGC TTCAGAGTGA GGCTGTTAGA GAAGCCATAA CGACTATCAA GGGAAAATCT         60
GAGGAGAAGA AGCGTAACTT TGTTGAGACA GTGGAGCTTC AGATTGGTCT GAAGAACTAT        120
GACCCACAAA AGGATAAGCG TTTCAGTGGA TCTGTGAAGC TCCCACATAT TCCTCGCCCA        180
AAAATGAAGA TCTGTATGCT TGGAGATGCT CAGCATGTTG AGGAGGCAGA GAAAATGGGA        240
CTTAGTAACA TGGATGTTGA GGCTTTGAAA AAGCTTAACA AGAACAAGAA GCTTGTTAAG        300
AAGCTTGCTA AGTCTTACCA TGCTTTCTTG GCTTCTGAGT CTGTCATTAA GCAGATTCCT        360
CGTCTTCTTG GTCCTGGTCT TAACAAGGCA GGAAAGTTCC CAACACTTGT GAGTCACCAA        420
GAGTCATTGG AAGCAAAGGT GAATGAGACC AAAGCAACAG TGAAGTTCCA GTTGAAGAAA        480
GTTCTGTGTA TGGGTGTTGC TGTTGGTAAC CTTTCCATGG AAGAGAAGCA GCTCTTCCAG        540
AATGTGCAGA TGAGTGTTAA CTTCCTCGTC TCGCTCTTGA AGAAGAATTG GCAAAACGTA        600
AGGTGTTTGT ACTTGAAGAG CACCATGGGA CCACCACAAA GAATCTTTTG A                 651

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