BLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= GabiPD|223304|Name:HA03B05u|Hordeum vulgare|Barke (482 letters) Database: Oryza sativa japonica annotation TIGR 6.1 (cDNA)20091211 67,393 sequences; 114,587,937 total letters Score E Sequences producing significant alignments: (bits) value GabiPD|6663612|Name:LOC_Os05g38740.1|Oryza sativa japonica cdn... 442 1e-123 GabiPD|6637757|Name:LOC_Os01g61920.1|Oryza sativa japonica cdn... 434 1e-121 GabiPD|6663650|Name:LOC_Os05g39050.1|Oryza sativa japonica cdn... 434 1e-121 GabiPD|6646346|Name:LOC_Os03g02780.1|Oryza sativa japonica cdn... 426 1e-118 GabiPD|6644411|Name:LOC_Os02g45940.1|Oryza sativa japonica cdn... 426 1e-118 GabiPD|6674429|Name:LOC_Os07g36500.1|Oryza sativa japonica cdn... 422 1e-117 GabiPD|6658301|Name:LOC_Os04g49420.1|Oryza sativa japonica cdn... 422 1e-117 GabiPD|6658300|Name:LOC_Os04g49410.1|Oryza sativa japonica cdn... 422 1e-117 GabiPD|6688619|Name:LOC_Os10g39410.1|Oryza sativa japonica cdn... 418 1e-116 GabiPD|6683459|Name:LOC_Os09g26350.1|Oryza sativa japonica cdn... 414 1e-115 GabiPD|6683458|Name:LOC_Os09g26340.1|Oryza sativa japonica cdn... 414 1e-115 GabiPD|6684692|Name:LOC_Os09g38020.1|Oryza sativa japonica cdn... 406 1e-112 GabiPD|6663614|Name:LOC_Os05g38760.1|Oryza sativa japonica cdn... 143 4e-33 >GabiPD|6663612|Name:LOC_Os05g38740.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 595 Score = 442 bits (223), Expect = 1e-123 Identities = 238/243 (97%) Frame = +1 / -1 Query: 240 tcagccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccat 299 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 tcagccgccgaagccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtccat 359 Query: 300 ggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgtt 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 ggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgtt 299 Query: 360 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgctt 419 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 298 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatgagcccggagatgcgctt 239 Query: 420 cacgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtc 479 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 238 cacgccgcccctcctcgccagcctccggatcgccggcttggtgatcccctggatgttgtc 179 Query: 480 gcg 482 ||| Sbjct: 178 gcg 176 >GabiPD|6637757|Name:LOC_Os01g61920.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 808 Score = 434 bits (219), Expect = 1e-121 Identities = 237/243 (97%) Frame = +1 / -1 Query: 240 tcagccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccat 299 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 tcagccgccgaagccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtccat 361 Query: 300 ggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgtt 359 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 360 ggcggtgacggtcttgcggcgggcgtgctccgtgtaggtgacggcgtcgcggatgacgtt 301 Query: 360 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgctt 419 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 300 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatcagcccggagatgcgctt 241 Query: 420 cacgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtc 479 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 cacgccgcccctcctcgccagcctccggatcgccggcttggtgatgccctggatgttgtc 181 Query: 480 gcg 482 ||| Sbjct: 180 gcg 178 >GabiPD|6663650|Name:LOC_Os05g39050.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 839 Score = 434 bits (219), Expect = 1e-121 Identities = 237/243 (97%) Frame = +1 / -1 Query: 240 tcagccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccat 299 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 tcagccgccgaagccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtccat 350 Query: 300 ggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgtt 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 ggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgtt 290 Query: 360 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgctt 419 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 289 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatcagcccggagatgcgctt 230 Query: 420 cacgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtc 479 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 229 cacgccgcccctccttgccagcctccggatcgccggcttggtgatcccctggatgttgtc 170 Query: 480 gcg 482 ||| Sbjct: 169 gcg 167 >GabiPD|6646346|Name:LOC_Os03g02780.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 732 Score = 426 bits (215), Expect = 1e-118 Identities = 236/243 (97%) Frame = +1 / -1 Query: 240 tcagccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccat 299 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 tcagccgccgaagccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtccat 410 Query: 300 ggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgtt 359 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 409 ggcggtgacggtcttgcggcgggcgtgctccgtgtaggtgacggcgtcgcggatgacgtt 350 Query: 360 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgctt 419 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 349 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatcagcccggagatgcgctt 290 Query: 420 cacgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtc 479 |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 289 cacgccgcccctcctcgccagccgccggatcgccggcttggtgatgccctggatgttgtc 230 Query: 480 gcg 482 ||| Sbjct: 229 gcg 227 >GabiPD|6644411|Name:LOC_Os02g45940.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 844 Score = 426 bits (215), Expect = 1e-118 Identities = 236/243 (97%) Frame = +1 / -1 Query: 240 tcagccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccat 299 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 tcagccgccgaagccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtccat 347 Query: 300 ggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgtt 359 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 346 ggcggtgacggtcttgcggcgggcgtgctccgtgtaggtgacggcgtcgcggatgacgtt 287 Query: 360 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgctt 419 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 286 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatgagcccggagatgcgctt 227 Query: 420 cacgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtc 479 |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 226 cacgccccccctcctcgccagcctccggatcgccggcttggtgatcccctggatgttgtc 167 Query: 480 gcg 482 ||| Sbjct: 166 gcg 164 >GabiPD|6674429|Name:LOC_Os07g36500.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 655 Score = 422 bits (213), Expect = 1e-117 Identities = 234/241 (97%) Frame = +1 / -1 Query: 242 agccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccatgg 301 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 agccgccgaagccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtccatgg 327 Query: 302 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 267 Query: 362 cgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgcttca 421 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 266 cgaggaagatcttgagcaccccgcgggtctcctcgtagatgagccccgagatgcgcttca 207 Query: 422 cgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtcgc 481 | |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 206 ccccgcccctcctcgccagcctccggatcgccggcttcgtgatcccctggatgttgtcgc 147 Query: 482 g 482 | Sbjct: 146 g 146 >GabiPD|6658301|Name:LOC_Os04g49420.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 1582 Score = 422 bits (213), Expect = 1e-117 Identities = 234/241 (97%) Frame = +1 / -1 Query: 242 agccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccatgg 301 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 agcctccgaagccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtccatgg 328 Query: 302 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 268 Query: 362 cgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgcttca 421 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 267 cgaggaagatcttgagcacgccgcgggtctcctcgtagatgagcccggagatgcgcttga 208 Query: 422 cgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtcgc 481 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 207 cgccgcccctcctcgccagcctccggatcgccggcttggtgatcccctggatgttgtcgc 148 Query: 482 g 482 | Sbjct: 147 g 147 >GabiPD|6658300|Name:LOC_Os04g49410.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 2163 Score = 422 bits (213), Expect = 1e-117 Identities = 234/241 (97%) Frame = +1 / +1 Query: 242 agccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccatgg 301 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1777 agcctccgaagccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtccatgg 1836 Query: 302 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1837 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 1896 Query: 362 cgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgcttca 421 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 1897 cgaggaagatcttgagcacgccgcgggtctcctcgtagatgagcccggagatgcgcttga 1956 Query: 422 cgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtcgc 481 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1957 cgccgcccctcctcgccagcctccggatcgccggcttggtgatcccctggatgttgtcgc 2016 Query: 482 g 482 | Sbjct: 2017 g 2017 >GabiPD|6688619|Name:LOC_Os10g39410.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 649 Score = 418 bits (211), Expect = 1e-116 Identities = 235/243 (96%) Frame = +1 / -1 Query: 240 tcagccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccat 299 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 tcagccgccgaagccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtccat 327 Query: 300 ggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgtt 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 ggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgtt 267 Query: 360 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgctt 419 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 266 ctcgaggaagatcttgagcacgccgcgggtctcctcgtagatcagcccggagatgcgctt 207 Query: 420 cacgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtc 479 |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 206 cacgccgcccctcctcgccagcctccggatcgcgggcttcgtgatcccctggatgttgtc 147 Query: 480 gcg 482 ||| Sbjct: 146 gcg 144 >GabiPD|6683459|Name:LOC_Os09g26350.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 1620 Score = 414 bits (209), Expect = 1e-115 Identities = 233/241 (96%) Frame = +1 / +1 Query: 242 agccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccatgg 301 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1255 agccgccgaagccgtagagggtgcggccctggcgcttgagggcgtagacgacgtccatgg 1314 Query: 302 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1315 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 1374 Query: 362 cgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgcttca 421 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1375 cgaggaagatcttgagcaccccgcgggtctcctcgtagatgagccccgagatgcgcttca 1434 Query: 422 cgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtcgc 481 | |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 1435 ccccgcccctcctcgccagcctccggatcgccggcttcgtgatcccctggatgttgtcgc 1494 Query: 482 g 482 | Sbjct: 1495 g 1495 >GabiPD|6683458|Name:LOC_Os09g26340.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 1022 Score = 414 bits (209), Expect = 1e-115 Identities = 233/241 (96%) Frame = +1 / -1 Query: 242 agccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccatgg 301 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 366 agccgccgaagccgtagagggtgcggccctggcgcttgagggcgtagacgacgtccatgg 307 Query: 302 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 247 Query: 362 cgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgcttca 421 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 246 cgaggaagatcttgagcaccccgcgggtctcctcgtagatgagccccgagatgcgcttca 187 Query: 422 cgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtcgc 481 | |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 186 ccccgcccctcctcgccagcctccggatcgccggcttcgtgatcccctggatgttgtcgc 127 Query: 482 g 482 | Sbjct: 126 g 126 >GabiPD|6684692|Name:LOC_Os09g38020.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 721 Score = 406 bits (205), Expect = 1e-112 Identities = 232/241 (96%) Frame = +1 / -1 Query: 242 agccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccatgg 301 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 agccgccgaatccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtccatgg 343 Query: 302 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 361 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 342 cggtgacggtcttgcggcgggcgtgctccgtgtaggtgacggcgtcgcggatgacgttct 283 Query: 362 cgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgcttca 421 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 282 cgaggaagatcttgagcacgccgcgggtctcctcgtagatcagcccggagatgcgcttca 223 Query: 422 cgccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgttgtcgc 481 |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 222 cgccgcccctcctcgccagcctccggatcgccggcttcgtgatcccctggatgttgtcgc 163 Query: 482 g 482 | Sbjct: 162 g 162 >GabiPD|6663614|Name:LOC_Os05g38760.1|Oryza sativa japonica cdna sequence (MSU 6.1) Length = 312 Score = 143 bits (72), Expect = 4e-33 Identities = 192/232 (82%) Frame = +1 / -1 Query: 244 ccgccgaagccgtacagggtgcggccctggcgcttgagcgcgtagacgacgtccatggcg 303 ||||||||| | || | |||||||||||| |||||||||| || ||||| |||||||| Sbjct: 308 ccgccgaagtcatagatggtgcggccctgaagcttgagcgcatatacgacatccatggcc 249 Query: 304 gtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttctcg 363 |||| ||||||||| | || |||||||||||||| | ||| |||| |||||| |||| | Sbjct: 248 atgacagtcttgcggtgagcatgctcggtgtaggtaatggcatcgcagatgacattcttg 189 Query: 364 aggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgcttcacg 423 |||||||||| ||||||||| || ||||| | |||||| | ||| ||||||||||||||| Sbjct: 188 aggaagatctcgagcacgccacgagtctctttgtagatcaaccctgagatgcgcttcacg 129 Query: 424 ccgcccctccgggccagcctccggatcgccggcttggtgatgccctggatgt 475 || ||| ||| || || | |||||| ||||||||| |||||| ||||||| Sbjct: 128 ccacccttccttgcaaggcgtcggatcaccggcttggcgatgccttggatgt 77 Database: Oryza sativa japonica annotation TIGR 6.1 (cDNA)20091211 Posted date: Dec 14, 2009 10:00 AM Number of letters in database: 114,587,937 Number of sequences in database: 67,393 Matrix: Search Statistics
