BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 864191|656 (700 letters) Database: non redundant GenBank CDS translations \+ PDB \+ SwissProt \+ PIR 2,870,162 sequences; 997,129,685 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_564338.1| CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP bi... 119 1e-25 ref|YP_476476.1| carbamoyl-phosphate synthase, large subunit [Sy... 94 3e-18 ref|YP_475167.1| carbamoyl-phosphate synthase, large subunit [Sy... 94 4e-18 ref|ZP_00514665.1| Carbamoyl-phosphate synthase, large subunit, ... 94 5e-18 ref|YP_399730.1| carbamoyl-phosphate synthase, large subunit [Sy... 93 9e-18 emb|CAE20997.1| carbamoyl-phosphate synthase, large subunit [Pro... 92 1e-17 ref|ZP_01124312.1| carbamoyl-phosphate synthase, large subunit [... 92 2e-17 dbj|BAA10403.1| carbamoyl-phosphate synthase, pyrimidine-specifi... 91 3e-17 sp|Q55756|CARB_SYNY3 Carbamoyl-phosphate synthase large chain (C... 91 3e-17 ref|ZP_00109569.1| COG0458: Carbamoylphosphate synthase large su... 90 7e-17 >ref|NP_564338.1| CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase/ ligase [Arabidopsis thaliana] gb|AAM91378.1| At1g29900/F1N18_6 [Arabidopsis thaliana] gb|AAK56257.1| At1g29900/F1N18_6 [Arabidopsis thaliana] gb|AAG10606.1| carbamoyl phosphate synthetase large chain (carB) [Arabidopsis thaliana] gb|AAB67843.1| carbamoyl phosphate synthetase large chain [Arabidopsis thaliana] Length = 1187 Score = 119 bits (297), Expect = 1e-25 Identities = 61/107 (57%), Positives = 78/107 (72%) Frame = -2 Query: 696 EVGFNIIATSGTAKVLELEGIPVEPVLKIHEGRPNARDMLKNGQIQVMVITXXXXXXXXX 517 E+GF I+ATSGTA LEL+GIPVE VLK+HEGRP+A DM+ NGQI +M+IT Sbjct: 1071 ELGFKIVATSGTAHFLELKGIPVERVLKLHEGRPHAADMVANGQIHLMLITSSGDALDQK 1130 Query: 516 XXXXXXXLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDYF 376 +ALAYKVP+ITTV GA AT + IKS+K+ +I++ ALQD+F Sbjct: 1131 DGRQLRQMALAYKVPVITTVAGALATAEGIKSLKSSAIKMTALQDFF 1177 >ref|YP_476476.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. JA-2-3B'a(2-13)] gb|ABD01213.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1082 Score = 94.4 bits (233), Expect = 3e-18 Identities = 47/106 (44%), Positives = 70/106 (66%) Frame = -2 Query: 693 VGFNIIATSGTAKVLELEGIPVEPVLKIHEGRPNARDMLKNGQIQVMVITXXXXXXXXXX 514 +GF ++AT GT KVL GIPV+ VLK+HEGRP+ D +KN QIQ ++I Sbjct: 965 LGFRLLATEGTQKVLAEHGIPVDKVLKLHEGRPHVIDAIKNHQIQ-LIINTPSGVEAQQD 1023 Query: 513 XXXXXXLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDYF 376 ALAYK+P++TT+ GA+AT AI+++++ S+++ LQD+F Sbjct: 1024 GQKIRRTALAYKIPLVTTLAGAKATAAAIRALQSGSLQVKCLQDFF 1069 >ref|YP_475167.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. JA-3-3Ab] gb|ABC99904.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. JA-3-3Ab] Length = 1074 Score = 94.0 bits (232), Expect = 4e-18 Identities = 48/105 (45%), Positives = 72/105 (68%) Frame = -2 Query: 693 VGFNIIATSGTAKVLELEGIPVEPVLKIHEGRPNARDMLKNGQIQVMVITXXXXXXXXXX 514 +GF ++AT+GT KVL GIPVE VLK+HEGRP+ D +KNGQIQ++V T Sbjct: 965 LGFRLLATAGTQKVLAEHGIPVEKVLKLHEGRPHVIDTIKNGQIQLIVNT-PSGGEAQQD 1023 Query: 513 XXXXXXLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 379 ALAYK+P++TT+ GA+AT AI+++++ S+ + +LQ++ Sbjct: 1024 AQKIRRTALAYKIPLVTTLAGAKATAAAIRALQSGSLGVKSLQEF 1068 >ref|ZP_00514665.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Crocosphaera watsonii WH 8501] gb|EAM52503.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [Crocosphaera watsonii WH 8501] Length = 1081 Score = 93.6 bits (231), Expect = 5e-18 Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 1/107 (0%) Frame = -2 Query: 696 EVGFNIIATSGTAKVLELEGIP-VEPVLKIHEGRPNARDMLKNGQIQVMVITXXXXXXXX 520 ++GF ++ATSGT KVLE GI VE VLK+HEGRP+ D +KN QIQ +I Sbjct: 974 DLGFKVVATSGTQKVLEENGIEGVEVVLKLHEGRPHVIDWIKNKQIQ-FIINTPSGEDSH 1032 Query: 519 XXXXXXXXLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 379 AL YK+PIITT+ GA+AT+ AI+S++ + +E+ ALQDY Sbjct: 1033 ADGRRIRRTALDYKLPIITTIAGAKATVAAIRSLQTEPLEVKALQDY 1079 >ref|YP_399730.1| carbamoyl-phosphate synthase, large subunit [Synechococcus elongatus PCC 7942] dbj|BAD79009.1| carbamoyl-phosphate synthase pyrimidine-specific large chain [Synechococcus elongatus PCC 6301] ref|YP_171529.1| carbamoyl-phosphate synthase large subunit [Synechococcus elongatus PCC 6301] gb|ABB56743.1| carbamoyl-phosphate synthase, large subunit [Synechococcus elongatus PCC 7942] Length = 1097 Score = 92.8 bits (229), Expect = 9e-18 Identities = 45/106 (42%), Positives = 69/106 (65%) Frame = -2 Query: 696 EVGFNIIATSGTAKVLELEGIPVEPVLKIHEGRPNARDMLKNGQIQVMVITXXXXXXXXX 517 ++GF ++AT GT KVL + + VEP+LK+HEGRP+ D LKN QIQ ++I Sbjct: 989 QLGFRVVATGGTQKVLAEQRLSVEPILKVHEGRPHVLDALKNDQIQ-LIINTPAGARAKV 1047 Query: 516 XXXXXXXLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 379 AL YKVP +TT+ GA+AT++AI+++ + +++ +LQDY Sbjct: 1048 DDQIIRRAALDYKVPTVTTIAGAKATVEAIRALLEQPLQVKSLQDY 1093 >emb|CAE20997.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. MIT 9313] ref|NP_894654.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus marinus str. MIT 9313] Length = 1102 Score = 92.4 bits (228), Expect = 1e-17 Identities = 46/105 (43%), Positives = 68/105 (64%) Frame = -2 Query: 696 EVGFNIIATSGTAKVLELEGIPVEPVLKIHEGRPNARDMLKNGQIQVMVITXXXXXXXXX 517 E+GF++ ATSGTA+ L G+ V+PVLK+HEGRPN D++++GQIQ +VI Sbjct: 996 ELGFDLTATSGTAQALNRAGLNVQPVLKVHEGRPNIEDLIRSGQIQ-LVINTPIGRQAAH 1054 Query: 516 XXXXXXXLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQD 382 AL Y VP +TT+ GARA ++ I +++ +S+ + ALQD Sbjct: 1055 DDKYLRRAALDYSVPTLTTIAGARAAVEGITALQQQSLSVAALQD 1099 >ref|ZP_01124312.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH 7805] gb|EAR18947.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH 7805] Length = 1107 Score = 91.7 bits (226), Expect = 2e-17 Identities = 47/104 (45%), Positives = 68/104 (65%) Frame = -2 Query: 693 VGFNIIATSGTAKVLELEGIPVEPVLKIHEGRPNARDMLKNGQIQVMVITXXXXXXXXXX 514 +GF++IATSGTA+ L G+ V PVLK+HEGRPN D +++G +Q +VI Sbjct: 997 LGFDLIATSGTAQTLSAAGLSVTPVLKVHEGRPNIEDQIRSGGVQ-LVINTPIGRQAAHD 1055 Query: 513 XXXXXXLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQD 382 AL Y VP +TT+ GAR+ ++ I+++++KSIEI ALQD Sbjct: 1056 DRYLRRAALDYSVPTVTTLAGARSAVEGIEALQSKSIEIHALQD 1099 >dbj|BAA10403.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Synechocystis sp. PCC 6803] ref|NP_442333.1| carbamoyl-phosphate synthase large subunit [Synechocystis sp. PCC 6803] pir||S76557 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5) large chain [similarity] - Synechocystis sp. (strain PCC 6803) Length = 1105 Score = 90.9 bits (224), Expect = 3e-17 Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 1/107 (0%) Frame = -2 Query: 696 EVGFNIIATSGTAKVLELEGIP-VEPVLKIHEGRPNARDMLKNGQIQVMVITXXXXXXXX 520 ++GF ++ATSGT KVL GI VE VLK+HEGRP+ D +KNGQIQ +I Sbjct: 998 DLGFKVVATSGTQKVLREHGIEGVEVVLKLHEGRPHVIDWIKNGQIQ-FIINTPSGEESQ 1056 Query: 519 XXXXXXXXLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 379 AL YK+PIITT+ G +AT+ A++S+++ +++ ALQDY Sbjct: 1057 LDGRTIRRAALDYKLPIITTIAGGKATVAALRSLQDHPLDVKALQDY 1103 >sp|Q55756|CARB_SYNY3 Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain) Length = 1081 Score = 90.9 bits (224), Expect = 3e-17 Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 1/107 (0%) Frame = -2 Query: 696 EVGFNIIATSGTAKVLELEGIP-VEPVLKIHEGRPNARDMLKNGQIQVMVITXXXXXXXX 520 ++GF ++ATSGT KVL GI VE VLK+HEGRP+ D +KNGQIQ +I Sbjct: 974 DLGFKVVATSGTQKVLREHGIEGVEVVLKLHEGRPHVIDWIKNGQIQ-FIINTPSGEESQ 1032 Query: 519 XXXXXXXXLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 379 AL YK+PIITT+ G +AT+ A++S+++ +++ ALQDY Sbjct: 1033 LDGRTIRRAALDYKLPIITTIAGGKATVAALRSLQDHPLDVKALQDY 1079 >ref|ZP_00109569.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in MJ) [Nostoc punctiforme PCC 73102] Length = 1087 Score = 89.7 bits (221), Expect = 7e-17 Identities = 44/106 (41%), Positives = 71/106 (66%) Frame = -2 Query: 696 EVGFNIIATSGTAKVLELEGIPVEPVLKIHEGRPNARDMLKNGQIQVMVITXXXXXXXXX 517 ++GF ++AT GT +VL +G+ +E VLK+HEGRP+ D +KN +IQ ++I Sbjct: 978 DLGFTVMATLGTRRVLLEQGLNIELVLKLHEGRPHVLDAIKNQKIQ-LIINTPSGEEAHT 1036 Query: 516 XXXXXXXLALAYKVPIITTVDGARATMDAIKSMKNKSIEILALQDY 379 ALAYK+PIITT+ GA+AT+ AI+S++N ++++ +Q+Y Sbjct: 1037 DARLIRRTALAYKIPIITTIAGAKATVAAIRSLQNTTLDVKTIQEY 1082 Database: non redundant GenBank CDS translations \+ PDB \+ SwissProt \+ PIR Posted date: May 19, 2006 3:38 PM Number of letters in database: 997,129,685 Number of sequences in database: 2,870,162 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,384,787,811 Number of Sequences: 2870162 Number of extensions: 30252106 Number of successful extensions: 69572 Number of sequences better than 1.0e-08: 10 Number of HSP's better than 0.0 without gapping: 66906 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 69401 length of database: 997,129,685 effective HSP length: 124 effective length of database: 641,229,597 effective search space used: 69252796476 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
