BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 125917|89 (613 letters) Database: Oryza sativa pep 62,827 sequences; 28,532,038 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value LOC_Os01g38970.1|11971.m10177|protein Carbamoyl-phosphate syntha... 364 e-101 >LOC_Os01g38970.1|11971.m10177|protein Carbamoyl-phosphate synthase large chain, putative, expressed Length = 1172 Score = 364 bits (935), Expect = e-101 Identities = 175/201 (87%), Positives = 184/201 (91%) Frame = +2 Query: 11 LDWDWEKIKYSLRVPNPDRIHAVYAAFKKGMRVEEIHEISFIDKWFLTELKELVDVEQFL 190 LDWDWEK+KYSLRVPNPDRIHA+YAAFKKGMR+++IHEISFIDKWFLTELKELVDVEQFL Sbjct: 487 LDWDWEKLKYSLRVPNPDRIHAIYAAFKKGMRIQDIHEISFIDKWFLTELKELVDVEQFL 546 Query: 191 ISKKLDELSKDDFYQVKRRGFSDNQIAFATSSSESDVRARRSALGVIPTYKRVDTCAAEF 370 IS+ LD+LSKDDFYQVKRRGFSD QIAFATSSSE+DVR RR AL V PTYKRVDTCAAEF Sbjct: 547 ISRGLDQLSKDDFYQVKRRGFSDTQIAFATSSSETDVRLRRLALEVAPTYKRVDTCAAEF 606 Query: 371 EANTPYMXXXXXXXXXXAPTNRKKVLILGGGPNRIGQGIEFDYCCCHASFALREAGYETI 550 EANTPYM PTN+KKVLILGGGPNRIGQGIEFDYCCCHASFALREAGYETI Sbjct: 607 EANTPYMYSSYEYECESVPTNKKKVLILGGGPNRIGQGIEFDYCCCHASFALREAGYETI 666 Query: 551 MMNSNPETVSTDYDTSDRLYF 613 MMNSNPETVSTDYDTSDRLYF Sbjct: 667 MMNSNPETVSTDYDTSDRLYF 687 Score = 63.9 bits (154), Expect = 1e-10 Identities = 30/58 (51%), Positives = 38/58 (65%) Frame = +2 Query: 437 KKVLILGGGPNRIGQGIEFDYCCCHASFALREAGYETIMMNSNPETVSTDYDTSDRLY 610 +K++ILG GP IGQ EFDY A AL E GYE +++NSNP T+ TD D + R Y Sbjct: 78 RKIMILGAGPIVIGQACEFDYSGTQACKALAEEGYEVVLVNSNPATIMTDPDLAHRTY 135 Database: Oryza sativa pep Posted date: May 20, 2006 10:31 AM Number of letters in database: 28,532,038 Number of sequences in database: 62,827 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,816,368 Number of Sequences: 62827 Number of extensions: 602542 Number of successful extensions: 2333 Number of sequences better than 1.0e-08: 1 Number of HSP's better than 0.0 without gapping: 2010 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2332 length of database: 28,532,038 effective HSP length: 100 effective length of database: 22,249,338 effective search space used: 2291681814 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
