GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT5G14260.3

Alternative name:AT5G14260

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

SET domain-containing protein (TAIR 7.0)
SET domain-containing protein similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07670.1); similar to Os12g0236900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066466.1); similar to Nuclear protein SET [Medicago truncatula] (GB:ABE81113.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) (MapMan)

Gene Ontology

GO term	Identifier	Type
chloroplast	GO:0009507	cellular component

MapMan Annotation:
BIN 27.3.69:	RNA.regulation of transcription.SET-domain transcriptional regulator family
BIN 27.3:	RNA.regulation of transcription
BIN 27:	RNA

Related with

MPIZp769C214Q	cDNA clone
MPIZp2001A193Q	cDNA clone
MSU_p955C2121	cDNA clone
MSU_p955I126	cDNA clone
MPIZp2000P024Q	cDNA clone
606B11	T-DNA Line
826A03	T-DNA Line
511B10	T-DNA Line
581H09	T-DNA Line
250170_at	Affymetrix representative on ATH1-121501

Orthologues and co-orthologues identified by INPARANOID

AT5G14260.1	Arabidopsis thaliana
AT5G14260.2	Arabidopsis thaliana
LOC_Os12g13460.1	Oryza sativa japonica

External resources

Arabidopsis eFP browser

Sequence: AT5G14260.3

submitter of sequence:	public data
length:	515
description:	amino acid sequence (TAIR 7.0)

AT5G14260.3
MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG         60
SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK ERPAHDQKHK PIHYVAASED        120
LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP        180
YIRELDRQRG RGQLDAESPL LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA        240
GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC        300
KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN        360
TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP YLRLGYMSDP SEMQSVISSQ        420
GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK        480
KILVACLTTT VDLLNQLPDT AISPCPAPYA PSLK*                                   515

Sequence: AT5G14260.3

submitter of sequence:	public data
length:	2067
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT5G14260.3
GATTTCTCCA TTTCCCTCTC TTATCCTCAA TGAAAAAAAT AATCTGAGAA AACGCAAAAG         60
AAGAACGGAG CAAAATCCTC AGAATCGTCG CCGGAGAATC TTTACGTTTC GACATAATCG        120
GAATTTTGGA ATTGATAATT CCGATGGAAG GGGTTATCAC ATGTTTCCAT ACGAAATGCG        180
TCTCTCTTCC AATTCGTTCT TTCCCACTTT CTAGGGTTTC TTCACTTCCT CGGTGGAGGA        240
ACAATAAATT GATCTCTTCA TCGCGATCGG TTCATCTAAG AAGCTTGTGC GTTTCGAGCT        300
CAGATACTTT AGTCGCGAGC GGTTCACCAA AGGAAGACGA GAGGCAGAGC AAAGTATCGA        360
GCAAGAAGGA AGGAGATGAC TCCGAGGATT TGAAGTTTTG GATGGATAAG AATGGGTTGC        420
CACCTTGCAA GGTTATTCTC AAGGAGAGAC CAGCTCATGA TCAGAAGCAT AAACCTATAC        480
ATTATGTTGC TGCTAGTGAG GATCTTCAGA AGGGTGATGT GGCGTTTTCA GTTCCTGATT        540
CTCTGGTGGT TACTCTGGAA AGAGTTTTGG GAAACGAGAC TATTGCTGAA CTGTTGACGA        600
CGAACAAATT ATCCGAACTG GCTTGTCTAG CTTTGTATTT GATGTATGAG AAGAAACAAG        660
GAAAGAAATC AGTATGGTAT CCCTATATAA GAGAACTTGA TCGTCAAAGA GGAAGAGGTC        720
AGTTAGATGC GGAATCCCCT TTGCTGTGGT CAGAGGCTGA GTTAGATTAC CTAACTGGTA        780
GTCCTACCAA GGCCGAAGTT CTTGAGAGGG CTGAAGGGAT CAAAAGAGAA TACAATGAGC        840
TTGACACTGT CTGGTTCATG GCTGGATCTT TGTTTCAGCA ATACCCATTT GACATACCAA        900
CTGAAGCTTT TTCATTTGAG ATTTTCAAAC AGGCATTTGT TGCCATTCAG TCATGTGTGG        960
TGCATTTACA AAATGTCGGT TTGGCTCGTC GGTTTGCTTT GGTTCCTCTT GGTCCTCCCT       1020
TGTTGGCCTA TTGTTCCAAC TGCAAGGCAA TGCTTACTGC TGTTGATGGT GCTGTTGAAC       1080
TCGTGGTAGA TAGGCCATAT AAGGCCGGGG ATCCTATAGT TGTCTGGTGT GGGCCACAAC       1140
CAAATGCGAA ATTGCTTCTG AACTATGGAT TTGTTGATGA GGATAACCCT TATGATAGAG       1200
TAATAGTTGA GGCAGCGTTG AACACTGAGG ATCCTCAATA CCAGGACAAG AGAATGGTTG       1260
CTCAAAGGAA CGGAAAATTA TCCCAACAAG TATTTCAGGT TCGTGTGGGA AAAGAAAGAG       1320
AAGCTGTTCA AGACATGCTT CCCTACCTGC GGTTGGGTTA CATGTCTGAT CCTTCTGAAA       1380
TGCAGTCAGT AATTTCATCC CAAGGTCCAG TTTGTCCGAT GAGCCCTTGT ATGGAAAGAG       1440
CAGTACTAGA TCAGCTTGCT AATTACTTCA TGAGACGGTT ATCTGGCTAC CCTACTACTC       1500
CGAAAGAAGA TGATGCATTG TTGGCAGATC CTAGTTTGAG TCCTAGGAAG CGAGTTGCAA       1560
CCCGGCTTGT CCAACTGGAG AAGAAAATAC TAGTTGCATG CCTTACGACA ACAGTTGATC       1620
TTTTAAATCA GTTGCCCGAT ACAGCCATCT CTCCATGCCC AGCACCATAT GCTCCTTCCT       1680
TGAAATAAAA AGGTTCGTGT TGTAGCTGCA ATTTGTGGGA CATGGCAGGA GTAATTTTTG       1740
GTCGTGTCCT TGATCATTAC AATCTGAGGT CGCTTAACTA CGGTCAGTTT TTGTGTGTAC       1800
AAGTCTAGAT CTGATCCTTT GCGGCTCGAA AACATGACTA GGAAGTTTCC AAAATAATTT       1860
TGATTTTGTA GATAAGGGTA CTAGGAGCGT TATCTGCCGC TTGACACGCA AATGTTTCAG       1920
CATATGATTG TCCTTTTTTT CTTACAACAA TGAAGCCTTA AGTCGCATTG TTCAAAGTGT       1980
ACATACATGA ATGAACCTTC TTGTTCTTCC CCAACTCCCT CTGTAATGTT TTATCTCTGT       2040
TTTAGAAATT TAGAATTTAT CATTTCC                                           2067

	SNP	left flanking [allel] right flanking
	SNP179144	TGCGTCTCTC[T/T]TCCAATTCGT
	SNP179147	TTGTGCGTTT[C/C]GAGCTCAGAT
	SNP179150	TTTAGTCGCG[A/A]GCGGTTCACC
	SNP179153	CTCTGGTGGT[T/T]ACTCTGGAAA
	SNP179156	TTGCAACCCG[G/G]CTTGTCCAAC

Sequence: AT5G14260.3

submitter of sequence:	public data
length:	3452
description:	genomic sequence (TAIR 7.0)

AT5G14260.3
GATTTCTCCA TTTCCCTCTC TTATCCTCAA TGAAAAAAAT AATCTGAGAA AACGCAAAAG         60
AAGAACGGAG CAAAATCCTC AGAATCGTCG CCGGAGAATC TTTACGTTTC GACATAATCG        120
GAATTTTGGA ATTGATAATT CCGATGGAAG GGGTTATCAC ATGTTTCCAT ACGAAATGCG        180
TCTCTCTTCC AATTCGTTCT TTCCCACTTT CTAGGGTTTC TTCACTTCCT CGGTGGAGGA        240
ACAATAAATT GATCTCTTCA TCGCGATCGG TTCATCTAAG AAGCTTGTGC GTTTCGAGCT        300
CAGATACTTT AGTCGCGAGC GGTTCACCAA AGGAAGACGA GAGGCAGAGC AAAGTATCGA        360
GCAAGAAGGA AGGAGATGAC TCCGAGGATT TGAAGTTTTG GATGGATAAG AATGGGTTGC        420
CACCTTGCAA GGTTATTCTC AAGGAGAGAC CAGCTCATGA TCAGAAGCAT AAACCTATAC        480
ATTATGTTGC TGCTAGTGAG GATCTTCAGG TGGTTGACTT AGCATTTCAA CAGTTTTATT        540
TGCTTATACA CAGTTCCATA GGGTATTCCA AGTATCAATT TCCGGGTTTT GATGGTAAAT        600
TTTTCCTAAT TACCTGTCTT TTACAGAAGG GTGATGTGGC GTTTTCAGTT CCTGATTCTC        660
TGGTGGTTAC TCTGGAAAGA GTTTTGGGAA ACGAGACTAT TGGTATGAGA CATTCTCTAT        720
TATGTTTCCT ATTCCATAAA GCTACTTCAT CAGTTATGCA CTATAATATT TGGATTAGAC        780
TTTGTGATTT CTCTTAGATA AGGGTGGGAT TACGGGTGTT TTGATTCTTG TCTGAAGCCA        840
TATAAACTCT CTTTATCACA CAGCTGAACT GTTGACGACG AACAAATTAT CCGAACTGGC        900
TTGTCTAGCT TTGTATTTGA TGTATGAGAA GAAACAAGGA AAGAAATCAG TATGGTATCC        960
CTATATAAGA GAACTTGATC GTCAAAGAGG AAGAGGTCAG TTAGATGCGG AATCCCCTTT       1020
GCTGTGGTCA GAGGCTGAGT TAGATTACCT AACTGGTAGT CCTACCAAGG TATTGCGTTA       1080
GTATATGCCG GACGTGTGAT GAACTAGTAT AGTGGGTTCT TAGTGGTTAA CTTCTTTAAC       1140
ATGGTTCAGG CCGAAGTTCT TGAGAGGGCT GAAGGGATCA AAAGAGAATA CAATGAGCTT       1200
GACACTGTCT GGTTCATGGC TGGATCTTTG TTTCAGGTGT TTGGCTACCT ACGATTTCGG       1260
CTTCTTCTTG TCATTTTAAT ATATGGAATG CTAAACATCG GCCTCGGACT TACACCATTT       1320
TATTTGTGTT TTGCAGCAAT ACCCATTTGA CATACCAACT GAAGCTTTTT CATTTGAGAT       1380
TTTCAAACAG GCATTTGTTG CCATTCAGTC ATGTGTGGTG CATTTACAAG TAATTTTCAT       1440
TCTTTTGGGG TTTACTTTTC ACAACTTGAA TGTCTTTCTG TATTTGAAAG AATAGTTAGA       1500
GTAAAATATA ATAATATGGT CTTACCTCTA TTACTCTATC GCTGAATCTA AAGTTTAGCT       1560
TGCAGCTCAT CATTTAAGCA AGTAGTCAGG TGGTGCTTGT TGCTTCTTCT AATTTAGATT       1620
GTTATGCTTC TTCTTGTACT CAGAATGTCG GTTTGGCTCG TCGGTTTGCT TTGGTTCCTC       1680
TTGGTCCTCC CTTGTTGGCC TATTGTTCCA ACTGCAAGGC AATGCTTACT GCTGTTGATG       1740
GTGCTGTTGA ACTCGTGGTA GATAGGCCAT ATAAGGCCGG GGATCCTATA GTTGTCTGGT       1800
GCGTCTGTAA GCCAAATTGC TTCCTACAGC TAGCTTTTTC ATTCTGATCT ATTTTTCATA       1860
CTTTTGCATT TCCTCCTTTA TTTGAAGGTG TGGGCCACAA CCAAATGCGA AATTGCTTCT       1920
GAACTATGGA TTTGTTGATG AGGATAACCC TTATGATAGA GTAATAGTTG AGGTAATTAC       1980
AAAACTTTGT TGCGTTACTG TAAACACTAG TGTAGTGTTC ATGTAATTCC TCACTGTTTG       2040
CATGTTTTAT GCGTCATACA CATTCAAGGC AGCGTTGAAC ACTGAGGATC CTCAATACCA       2100
GGACAAGAGA ATGGTTGCTC AAAGGAACGG AAAATTATCC CAACAAGTAT TTCAGGTATG       2160
ACTTTCCCAT GGCAACAAGT CTACTTTGAG ATGTTCTGTC TGATTTTGGT TTTGCATCCA       2220
TCTCAGGTTC GTGTGGGAAA AGAAAGAGAA GCTGTTCAAG ACATGCTTCC CTACCTGCGG       2280
TTGGGTTACA TGTCTGATCC TTCTGAAATG CAGTCAGTAA TTTCATCCCA AGGTCCAGTT       2340
TGTCCGGTAG GTAGAGGATG AGTGACCTGG CAAAACTTTT TTCTAAGTAA TCTTTGATAT       2400
TTCCTTGATT GCATCAAATG TTCAGTCCCT ACATGTGAGG CCTCCAATGT TACTGCTACA       2460
TAGAAAGTTG TTGACACACT TGTAAAGGTT TAACTCTCAA GCTCTTTTGT AGATGAGCCC       2520
TTGTATGGAA AGAGCAGTAC TAGATCAGCT TGCTAATTAC TTCATGAGAC GGTTATCTGG       2580
CTACCCTACT ACTCCGAAAG AAGATGATGC ATTGGTATGT CTTTAGACTT TGTGATCGCT       2640
ACAGATCAAA CACATTTTTT TGTTTGGTTT TCCTGCATGA CATGACATTG ATAGAATTCC       2700
CAATCAACAG TTGGCAGATC CTAGTTTGAG TCCTAGGAAG CGAGTTGCAA CCCGGCTTGT       2760
CCAACTGGAG AAGAAAATAC TAGTTGCATG CCTTACGACA ACAGTTGATC TTTTAAATCA       2820
GTTGCCCGAT ACAGCCATCT CTCCATGCCC AGCACCATAT GCTCCTTCCT TGAAATAAAA       2880
AGGCACGTAT CTCTGCCCCC TGCCTCTCTC ACTTAATAAC TAATATTTTC TGACCTTCTA       2940
AAACTATGTT GGTTCAGGTT CGTGTTGTAG CTGCAATTTG TGGGACATGG CAGGAGTAAT       3000
TTTTGGTCGT GTCCTTGATC ATTACAATCT GAGGTCGCTT AACTACGGTC AGTTTTTGTG       3060
TGTACAAGTC TAGATCTGAT CCTTTGCGGC TCGAAAACAT GACTAGGAAG TTTCCAAAAT       3120
AATTTTGATT TTGTAAGATT TCTTGCTAGC TACAAAGCCG AAATCTATCT CCTTATAGAT       3180
GGTTTATTGT TGTTTATGAA TTCAGAAGTT GATGATTTCA AAGTTTTAAT GCATTGCAAA       3240
TTGCAATTGC AGGTAGATAA GGGTACTAGG AGCGTTATCT GCCGCTTGAC ACGCAAATGT       3300
TTCAGCATAT GATTGTCCTT TTTTTCTTAC AACAATGAAG CCTTAAGTCG CATTGTTCAA       3360
AGTGTACATA CATGAATGAA CCTTCTTGTT CTTCCCCAAC TCCCTCTGTA ATGTTTTATC       3420
TCTGTTTTAG AAATTTAGAA TTTATCATTT CC                                     3452

Sequence: AT5G14260.3

submitter of sequence:	public data
length:	1545
description:	coding sequence (TAIR 7.0)

AT5G14260.3
ATGGAAGGGG TTATCACATG TTTCCATACG AAATGCGTCT CTCTTCCAAT TCGTTCTTTC         60
CCACTTTCTA GGGTTTCTTC ACTTCCTCGG TGGAGGAACA ATAAATTGAT CTCTTCATCG        120
CGATCGGTTC ATCTAAGAAG CTTGTGCGTT TCGAGCTCAG ATACTTTAGT CGCGAGCGGT        180
TCACCAAAGG AAGACGAGAG GCAGAGCAAA GTATCGAGCA AGAAGGAAGG AGATGACTCC        240
GAGGATTTGA AGTTTTGGAT GGATAAGAAT GGGTTGCCAC CTTGCAAGGT TATTCTCAAG        300
GAGAGACCAG CTCATGATCA GAAGCATAAA CCTATACATT ATGTTGCTGC TAGTGAGGAT        360
CTTCAGAAGG GTGATGTGGC GTTTTCAGTT CCTGATTCTC TGGTGGTTAC TCTGGAAAGA        420
GTTTTGGGAA ACGAGACTAT TGCTGAACTG TTGACGACGA ACAAATTATC CGAACTGGCT        480
TGTCTAGCTT TGTATTTGAT GTATGAGAAG AAACAAGGAA AGAAATCAGT ATGGTATCCC        540
TATATAAGAG AACTTGATCG TCAAAGAGGA AGAGGTCAGT TAGATGCGGA ATCCCCTTTG        600
CTGTGGTCAG AGGCTGAGTT AGATTACCTA ACTGGTAGTC CTACCAAGGC CGAAGTTCTT        660
GAGAGGGCTG AAGGGATCAA AAGAGAATAC AATGAGCTTG ACACTGTCTG GTTCATGGCT        720
GGATCTTTGT TTCAGCAATA CCCATTTGAC ATACCAACTG AAGCTTTTTC ATTTGAGATT        780
TTCAAACAGG CATTTGTTGC CATTCAGTCA TGTGTGGTGC ATTTACAAAA TGTCGGTTTG        840
GCTCGTCGGT TTGCTTTGGT TCCTCTTGGT CCTCCCTTGT TGGCCTATTG TTCCAACTGC        900
AAGGCAATGC TTACTGCTGT TGATGGTGCT GTTGAACTCG TGGTAGATAG GCCATATAAG        960
GCCGGGGATC CTATAGTTGT CTGGTGTGGG CCACAACCAA ATGCGAAATT GCTTCTGAAC       1020
TATGGATTTG TTGATGAGGA TAACCCTTAT GATAGAGTAA TAGTTGAGGC AGCGTTGAAC       1080
ACTGAGGATC CTCAATACCA GGACAAGAGA ATGGTTGCTC AAAGGAACGG AAAATTATCC       1140
CAACAAGTAT TTCAGGTTCG TGTGGGAAAA GAAAGAGAAG CTGTTCAAGA CATGCTTCCC       1200
TACCTGCGGT TGGGTTACAT GTCTGATCCT TCTGAAATGC AGTCAGTAAT TTCATCCCAA       1260
GGTCCAGTTT GTCCGATGAG CCCTTGTATG GAAAGAGCAG TACTAGATCA GCTTGCTAAT       1320
TACTTCATGA GACGGTTATC TGGCTACCCT ACTACTCCGA AAGAAGATGA TGCATTGTTG       1380
GCAGATCCTA GTTTGAGTCC TAGGAAGCGA GTTGCAACCC GGCTTGTCCA ACTGGAGAAG       1440
AAAATACTAG TTGCATGCCT TACGACAACA GTTGATCTTT TAAATCAGTT GCCCGATACA       1500
GCCATCTCTC CATGCCCAGC ACCATATGCT CCTTCCTTGA AATAA                       1545