GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT4G15248.1

Alternative name:AT4G15248

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

DNA binding / zinc ion binding (TAIR 7.0)

Gene Ontology

GO term	Identifier	Type
zinc ion binding	GO:0008270	molecular function
DNA binding	GO:0003677	molecular function
intracellular	GO:0005622	cellular component

External resources

Arabidopsis eFP browser

Cell eFP Browser

iHOP (AT4G15248)

Sequence: AT4G15248.1

submitter of sequence:	public data
length:	118
description:	amino acid sequence (TAIR 7.0)

AT4G15248.1
MCRGFEKEEE RRSDNGGCQR LCTESHKAPV SCELCGENAT VYCEADAAFL CRKCDRWVHS         60
ANFLARRHLR RVICTTCRKL TRRCLVGDNF NVVLPEIRMI ARIEEHSSDH KIPFVFL*          118

Sequence: AT4G15248.1

submitter of sequence:	public data
length:	354
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT4G15248.1
ATGTGTAGAG GGTTTGAGAA AGAAGAAGAG AGAAGAAGCG ACAATGGAGG ATGCCAAAGA         60
CTATGCACGG AGAGTCACAA AGCTCCGGTA AGCTGTGAGC TTTGCGGCGA GAACGCCACC        120
GTGTATTGTG AGGCAGACGC AGCTTTCCTT TGTAGGAAAT GCGATCGATG GGTCCATTCT        180
GCTAATTTTC TAGCTCGGAG ACATCTCCGG CGCGTGATCT GCACGACCTG TCGGAAGCTA        240
ACTCGTCGAT GTCTTGTCGG TGATAATTTT AATGTTGTTT TACCGGAGAT AAGGATGATA        300
GCAAGGATTG AAGAACATAG TAGTGATCAC AAAATTCCCT TTGTGTTTCT CTGA              354

	SNP	left flanking [allel] right flanking
	SNP93102	ACGGAGAGTC[A/A]CAAAGCTCCG
	SNP93103	AGCTTTGCGG[C/C]GAGAACGCCA
	SNP93104	ACGCCACCGT[G/G]TATTGTGAGG
	SNP93105	AGGCAGACGC[A/A]GCTTTCCTTT
	SNP93106	TCCTTTGTAG[G/G]AAATGCGATC
	SNP93107	GACATCTCCG[G/G]CGCGTGATCT
	SNP93108	CTGTCGGAAG[C/C]TAACTCGTCG
	SNP93109	ACTCGTCGAT[G/G]TCTTGTCGGT
	SNP93110	CCGGAGATAA[G/G]GATGATAGCA
	SNP93111	ATGATAGCAA[G/G]GATTGAAGAA

Sequence: AT4G15248.1

submitter of sequence:	public data
length:	354
description:	coding sequence (TAIR 7.0)

AT4G15248.1
ATGTGTAGAG GGTTTGAGAA AGAAGAAGAG AGAAGAAGCG ACAATGGAGG ATGCCAAAGA         60
CTATGCACGG AGAGTCACAA AGCTCCGGTA AGCTGTGAGC TTTGCGGCGA GAACGCCACC        120
GTGTATTGTG AGGCAGACGC AGCTTTCCTT TGTAGGAAAT GCGATCGATG GGTCCATTCT        180
GCTAATTTTC TAGCTCGGAG ACATCTCCGG CGCGTGATCT GCACGACCTG TCGGAAGCTA        240
ACTCGTCGAT GTCTTGTCGG TGATAATTTT AATGTTGTTT TACCGGAGAT AAGGATGATA        300
GCAAGGATTG AAGAACATAG TAGTGATCAC AAAATTCCCT TTGTGTTTCT CTGA              354

Gene: AT4G15248.1

Alternative name:AT4G15248

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

zinc ion binding (TAIR 9.0)

Gene Ontology

GO term	Identifier	Type
zinc ion binding	GO:0008270	molecular function
intracellular	GO:0005622	cellular component

Orthologues and co-orthologues identified by INPARANOID

POPTR_0007s02690.1

Populus trichocarpa

External resources

Arabidopsis eFP browser

Cell eFP Browser

iHOP (AT4G15248)

Sequence: AT4G15248.1

submitter of sequence:	public data
length:	354
description:	coding sequence (TAIR 9.0)

AT4G15248.1
ATGTGTAGAG GGTTTGAGAA AGAAGAAGAG AGAAGAAGCG ACAATGGAGG ATGCCAAAGA         60
CTATGCACGG AGAGTCACAA AGCTCCGGTA AGCTGTGAGC TTTGCGGCGA GAACGCCACC        120
GTGTATTGTG AGGCAGACGC AGCTTTCCTT TGTAGGAAAT GCGATCGATG GGTCCATTCT        180
GCTAATTTTC TAGCTCGGAG ACATCTCCGG CGCGTGATCT GCACGACCTG TCGGAAGCTA        240
ACTCGTCGAT GTCTTGTCGG TGATAATTTT AATGTTGTTT TACCGGAGAT AAGGATGATA        300
GCAAGGATTG AAGAACATAG TAGTGATCAC AAAATTCCCT TTGTGTTTCT CTGA              354

Sequence: AT4G15248.1

submitter of sequence:	public data
length:	118
description:	amino acid sequence (TAIR 9.0)

AT4G15248.1
MCRGFEKEEE RRSDNGGCQR LCTESHKAPV SCELCGENAT VYCEADAAFL CRKCDRWVHS         60
ANFLARRHLR RVICTTCRKL TRRCLVGDNF NVVLPEIRMI ARIEEHSSDH KIPFVFL*          118

Sequence: AT4G15248.1

submitter of sequence:	public data
length:	526
description:	cdna sequence (TAIR 9.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT4G15248.1
CTTGAACACA AGAGAGACAA AGAAAGAGTA AAGATGTGTA GAGGGTTTGA GAAAGAAGAA         60
GAGAGAAGAA GCGACAATGG AGGATGCCAA AGACTATGCA CGGAGAGTCA CAAAGCTCCG        120
GTAAGCTGTG AGCTTTGCGG CGAGAACGCC ACCGTGTATT GTGAGGCAGA CGCAGCTTTC        180
CTTTGTAGGA AATGCGATCG ATGGGTCCAT TCTGCTAATT TTCTAGCTCG GAGACATCTC        240
CGGCGCGTGA TCTGCACGAC CTGTCGGAAG CTAACTCGTC GATGTCTTGT CGGTGATAAT        300
TTTAATGTTG TTTTACCGGA GATAAGGATG ATAGCAAGGA TTGAAGAACA TAGTAGTGAT        360
CACAAAATTC CCTTTGTGTT TCTCTGATTT TATGTTTTGT TTTTCGCGTA ATTAAGATTA        420
AATATTGGTA GGGTTTTTTC TCTGGAAATG TTCTAAGAAT GTATATTTTC ATTCTAAAGC        480
TTAAAAGTAA TATATGAACA CCTAGAAAAC ATATTGATTT AATAGT                       526

Sequence: AT4G15248.1

submitter of sequence:	public data
length:	526
description:	genomic sequence (TAIR 9.0)

AT4G15248.1
CTTGAACACA AGAGAGACAA AGAAAGAGTA AAGATGTGTA GAGGGTTTGA GAAAGAAGAA         60
GAGAGAAGAA GCGACAATGG AGGATGCCAA AGACTATGCA CGGAGAGTCA CAAAGCTCCG        120
GTAAGCTGTG AGCTTTGCGG CGAGAACGCC ACCGTGTATT GTGAGGCAGA CGCAGCTTTC        180
CTTTGTAGGA AATGCGATCG ATGGGTCCAT TCTGCTAATT TTCTAGCTCG GAGACATCTC        240
CGGCGCGTGA TCTGCACGAC CTGTCGGAAG CTAACTCGTC GATGTCTTGT CGGTGATAAT        300
TTTAATGTTG TTTTACCGGA GATAAGGATG ATAGCAAGGA TTGAAGAACA TAGTAGTGAT        360
CACAAAATTC CCTTTGTGTT TCTCTGATTT TATGTTTTGT TTTTCGCGTA ATTAAGATTA        420
AATATTGGTA GGGTTTTTTC TCTGGAAATG TTCTAAGAAT GTATATTTTC ATTCTAAAGC        480
TTAAAAGTAA TATATGAACA CCTAGAAAAC ATATTGATTT AATAGT                       526

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