GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT3G16770.1

  Alternative name:AT3G16770
  Alternative name:ATEBP
  Alternative name:RELATED TO AP2 3
  Alternative name:RAP2.3

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

ATEBP/RAP2.3 (RELATED TO AP2 3); DNA binding / protein binding / transcription factor/ transcriptional activator (TAIR 7.0)

ATEBP/RAP2.3 (RELATED TO AP2 3); DNA binding / protein binding / transcription factor/ transcriptional activator Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3. Identical to AP2 domain transcription factor RAP2.3 (Related to AP2 protein 3) (Cadmium-induced protein AS30) [Arabidopsis Thaliana] (GB:P42736;GB:O23105); similar to RAP2.2, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G14230.3); similar to AP2/EREBP transcription factor ERF-2 [Gossypium hirsutum] (GB:AAV51937.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) (MapMan)

Gene Ontology

GO term	Identifier	Type
response to ethylene stimulus	GO:0009723	biological process
response to cytokinin stimulus	GO:0009735	biological process
response to other organism	GO:0051707	biological process
ethylene mediated signaling pathway	GO:0009873	biological process
cell death	GO:0008219	biological process
response to stress	GO:0006950	biological process
protein binding	GO:0005515	molecular function
DNA binding	GO:0003677	molecular function
transcription activator activity	GO:0016563	molecular function
transcription factor activity	GO:0003700	molecular function
nucleus	GO:0005634	cellular component

MapMan Annotation:
BIN 27.3.3:	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family
BIN 27.3:	RNA.regulation of transcription
BIN 27:	RNA

Related with

MPIZp768N127Q	cDNA clone
MSU_p955L1225	cDNA clone
MSU_p955C0826	cDNA clone
734E09	T-DNA Line
MSU_p955H2320	cDNA clone
MSU_p955J1519	cDNA clone
MSU_p955H219	cDNA clone
258434_at	Affymetrix representative on ATH1-121501

In vitro kinase assay on protein microarray

The recombinant protein expressed by this clone is an in vitro substrate for the protein kinase(s):

AT4G01370.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT4G11330.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804

External resources

Arabidopsis eFP browser

Sequence: AT3G16770.1

submitter of sequence:	public data
length:	249
description:	amino acid sequence (TAIR 7.0)

AT3G16770.1
MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA         60
VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG VRVWLGTFNT AEEAAMAYDV        120
AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV        180
ECIGFGNGDE FQNLSYGFEP DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML        240
DDVIASYE*                                                                249

Sequence: AT3G16770.1

submitter of sequence:	public data
length:	1124
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT3G16770.1
AAGTAATTCA TTTCACTCAC ACTTTATTAC CATAAAACAT TTATTTTGCG CCTATAAAGG         60
CATTTCAGCT CCACCGTAGG AAACTTTCTC TTGAAAGAAA CCCACAGCAA CAAACAGAGA        120
AAATGTGTGG CGGTGCTATT ATTTCCGATT ATGCCCCTCT CGTCACCAAG GCCAAGGGCC        180
GTAAACTCAC GGCTGAGGAA CTCTGGTCAG AGCTCGATGC TTCCGCCGCC GACGACTTCT        240
GGGGTTTCTA TTCCACCTCC AAACTCCATC CCACCAACCA AGTTAACGTG AAAGAGGAGG        300
CAGTGAAGAA GGAGCAGGCA ACAGAGCCGG GGAAACGGAG GAAGAGGAAG AATGTTTATA        360
GAGGGATACG TAAGCGTCCA TGGGGAAAAT GGGCGGCTGA GATTCGAGAT CCACGAAAAG        420
GTGTTAGAGT TTGGCTTGGT ACGTTCAACA CGGCGGAGGA AGCTGCCATG GCTTATGATG        480
TTGCGGCCAA GCAGATCCGT GGTGATAAAG CCAAGCTCAA CTTCCCAGAT CTGCACCATC        540
CTCCTCCTCC TAATTATACT CCTCCGCCGT CATCGCCACG ATCAACCGAT CAGCCTCCGG        600
CGAAGAAGGT CTGCGTTGTC TCTCAGAGTG AGAGCGAGTT AAGTCAGCCG AGTTTCCCGG        660
TGGAGTGTAT AGGATTTGGA AATGGGGACG AGTTTCAGAA CCTGAGTTAC GGATTTGAGC        720
CGGATTATGA TCTGAAACAG CAGATATCGA GCTTGGAATC GTTCCTTGAG CTGGACGGTA        780
ACACGGCGGA GCAACCGAGT CAGCTTGATG AGTCCGTTTC CGAGGTGGAT ATGTGGATGC        840
TTGATGATGT CATTGCGTCG TATGAGTAAA AGAAAAAAAA TAAGTTTAAA AAAAGTTAAA        900
TAAAGTCTGT AATATATATG TAACCGCCGT TACTTTTAAA AGGTTTTTAC CGTCGCATTG        960
GACTGCTGAT GATGTCTGTT GTGTAATGTG TAGAATGTGA CCAAATGGAC GTTATATTAC       1020
GGTTTGTGGT ATTATTAGTT TCTTAGATGG AAAAACTTAC ATGTGTAAAT AAGATTTGTA       1080
ATGTAAGACG AAGTACTTAT AACTTCTTAA CTGTTTTGTG GTAG                        1124

	SNP	left flanking [allel] right flanking
	SNP75587	AGGGCCGTAA[A/A]CTCACGGCTG
	SNP75588	GAAAAGGTGT[T/T]AGAGTTTGGC
	SNP75589	ATGTTGCGGC[C/C]AAGCAGATCC
	SNP75590	TCCGTGGTGA[T/T]AAAGCCAAGC
	SNP75591	CCGATCAGCC[T/T]CCGGCGAAGA
	SNP75592	CGAAGAAGGT[C/C]TGCGTTGTCT
	SNP75593	GTTGTCTCTC[A/A]GAGTGAGAGC
	SNP75594	ACGGATTTGA[G/G]CCGGATTATG
	SNP75595	GGATTATGAT[C/C]TGAAACAGCA
	SNP75596	CGAGCTTGGA[A/A]TCGTTCCTTG
	SNP75597	TCCTTGAGCT[G/G]GACGGTAACA
	SNP75598	AACCGAGTCA[G/G]CTTGATGAGT
	SNP75599	TGATGAGTCC[G/G]TTTCCGAGGT

Sequence: AT3G16770.1

submitter of sequence:	public data
length:	1362
description:	genomic sequence (TAIR 7.0)

AT3G16770.1
AAGTAATTCA TTTCACTCAC ACTTTATTAC CATAAAACAT TTATTTTGCG CCTATAAAGG         60
CATTTCAGCT CCACCGTAGG AAACTTTCTC TTGAAAGAAA CCCACAGCAA CAAACAGAGA        120
AAATGTGTGG CGGTGCTATT ATTTCCGATT ATGCCCCTCT CGTCACCAAG GCCAAGGGCC        180
GTAAACTCAC GGCTGAGGAA CTCTGGTCAG AGCTCGATGC TTCCGCCGCC GACGACTTCT        240
GGGGTTTCTA TTCCACCTCC AAACTCCATC CCACCAACCA AGGTATGTAC TCTCCTATTA        300
ATCATAAACA AAAATACAAA ATCATTCAAA AACACAAACA TATAGTTTTT TCTAACCTTT        360
TTAGCAAAAA GGTAAAATAA TATTTCTGGA ACTTACGGAA GATGATAAAA AAAAAATATT        420
TGTGGTTTTG GTAATGTAAT TTATCAGGAT TATTTAATTA TCTGTGTGGG GTTAAAATTG        480
TAAATTTTGA ACTTTGGGGA ATCCGGTGAA AATTTTGAAG TTAACGTGAA AGAGGAGGCA        540
GTGAAGAAGG AGCAGGCAAC AGAGCCGGGG AAACGGAGGA AGAGGAAGAA TGTTTATAGA        600
GGGATACGTA AGCGTCCATG GGGAAAATGG GCGGCTGAGA TTCGAGATCC ACGAAAAGGT        660
GTTAGAGTTT GGCTTGGTAC GTTCAACACG GCGGAGGAAG CTGCCATGGC TTATGATGTT        720
GCGGCCAAGC AGATCCGTGG TGATAAAGCC AAGCTCAACT TCCCAGATCT GCACCATCCT        780
CCTCCTCCTA ATTATACTCC TCCGCCGTCA TCGCCACGAT CAACCGATCA GCCTCCGGCG        840
AAGAAGGTCT GCGTTGTCTC TCAGAGTGAG AGCGAGTTAA GTCAGCCGAG TTTCCCGGTG        900
GAGTGTATAG GATTTGGAAA TGGGGACGAG TTTCAGAACC TGAGTTACGG ATTTGAGCCG        960
GATTATGATC TGAAACAGCA GATATCGAGC TTGGAATCGT TCCTTGAGCT GGACGGTAAC       1020
ACGGCGGAGC AACCGAGTCA GCTTGATGAG TCCGTTTCCG AGGTGGATAT GTGGATGCTT       1080
GATGATGTCA TTGCGTCGTA TGAGTAAAAG AAAAAAAATA AGTTTAAAAA AAGTTAAATA       1140
AAGTCTGTAA TATATATGTA ACCGCCGTTA CTTTTAAAAG GTTTTTACCG TCGCATTGGA       1200
CTGCTGATGA TGTCTGTTGT GTAATGTGTA GAATGTGACC AAATGGACGT TATATTACGG       1260
TTTGTGGTAT TATTAGTTTC TTAGATGGAA AAACTTACAT GTGTAAATAA GATTTGTAAT       1320
GTAAGACGAA GTACTTATAA CTTCTTAACT GTTTTGTGGT AG                          1362

Sequence: AT3G16770.1

submitter of sequence:	public data
length:	747
description:	coding sequence (TAIR 7.0)

AT3G16770.1
ATGTGTGGCG GTGCTATTAT TTCCGATTAT GCCCCTCTCG TCACCAAGGC CAAGGGCCGT         60
AAACTCACGG CTGAGGAACT CTGGTCAGAG CTCGATGCTT CCGCCGCCGA CGACTTCTGG        120
GGTTTCTATT CCACCTCCAA ACTCCATCCC ACCAACCAAG TTAACGTGAA AGAGGAGGCA        180
GTGAAGAAGG AGCAGGCAAC AGAGCCGGGG AAACGGAGGA AGAGGAAGAA TGTTTATAGA        240
GGGATACGTA AGCGTCCATG GGGAAAATGG GCGGCTGAGA TTCGAGATCC ACGAAAAGGT        300
GTTAGAGTTT GGCTTGGTAC GTTCAACACG GCGGAGGAAG CTGCCATGGC TTATGATGTT        360
GCGGCCAAGC AGATCCGTGG TGATAAAGCC AAGCTCAACT TCCCAGATCT GCACCATCCT        420
CCTCCTCCTA ATTATACTCC TCCGCCGTCA TCGCCACGAT CAACCGATCA GCCTCCGGCG        480
AAGAAGGTCT GCGTTGTCTC TCAGAGTGAG AGCGAGTTAA GTCAGCCGAG TTTCCCGGTG        540
GAGTGTATAG GATTTGGAAA TGGGGACGAG TTTCAGAACC TGAGTTACGG ATTTGAGCCG        600
GATTATGATC TGAAACAGCA GATATCGAGC TTGGAATCGT TCCTTGAGCT GGACGGTAAC        660
ACGGCGGAGC AACCGAGTCA GCTTGATGAG TCCGTTTCCG AGGTGGATAT GTGGATGCTT        720
GATGATGTCA TTGCGTCGTA TGAGTAA                                            747