GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT3G15030.2

Alternative name:AT3G15030

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

TCP4 (TCP family transcription factor 4, maternal effect embryo arrest 35); transcription factor (TAIR 7.0)

TCP4 (TCP family transcription factor 4, maternal effect embryo arrest 35); transcription factor Arabidopsis thaliana TCP family transcription factor similar to TCP3 (TCP family transcription factor 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G53230.1); similar to mutant cincinnata [Antirrhinum majus] (GB:AAO43102.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) (MapMan)

Gene Ontology

GO term	Identifier	Type
positive regulation of development, heterochronic	GO:0045962	biological process
regulation of transcription	GO:0045449	biological process
leaf development	GO:0048366	biological process
embryonic development ending in seed dormancy	GO:0009793	biological process
leaf morphogenesis	GO:0009965	biological process
cell differentiation	GO:0030154	biological process
transcription factor activity	GO:0003700	molecular function

MapMan Annotation:
BIN 27.3.29:	RNA.regulation of transcription.TCP transcription factor family
BIN 27.3:	RNA.regulation of transcription
BIN 27:	RNA

Related with

MPMGp2011I06202	cDNA clone
MPMGp2011J11202	cDNA clone
REGIo476E122D	cDNA clone
REGIo476F123D	cDNA clone
350D01	T-DNA Line
257267_at	Affymetrix representative on ATH1-121501

Orthologues and co-orthologues identified by INPARANOID

AT3G15030.1	Arabidopsis thaliana
LOC_Os01g11550.1	Oryza sativa japonica

In vitro kinase assay on protein microarray

The recombinant protein expressed by this clone is an in vitro substrate for the protein kinase(s):

AT4G01370.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT4G11330.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT1G59580.2	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT1G59580.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT3G45640.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT3G59790.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT2G43790.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804

External resources

Arabidopsis eFP browser

Sequence: AT3G15030.2

submitter of sequence:	public data
length:	421
description:	amino acid sequence (TAIR 7.0)

AT3G15030.2
MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD         60
RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI DELAELPPWN PADAIRLAAA        120
NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI        180
ADTIKSFFPV IGSSTEAPSN HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL        240
LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT        300
GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD        360
LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE EEQHDGLTHK PSSASSISRH        420
*                                                                        421

Sequence: AT3G15030.2

submitter of sequence:	public data
length:	1927
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT3G15030.2
CTTCATCTCT TTGGTCTCCT TCTTGCGTTT TCTATTTACT ACACAGACCA AACAATAGAG         60
AGAGACTTTA AGCTATAGAA AAAAAGAGAG AGATTCTCTC AAATATGGGT TAGTCCACAA        120
TTTTCACTAA ACCTCTTCTT CTTAGGATTG TTTTTAGGGT TAGGGTTTTG AGGTGAGGAG        180
AGCAAGTATG CGGGAGTTTC ATCCTTTTTG AGTTACTCTG GATTCCTCAC CCTCTAACGA        240
CGACCACCGT CGCCGCCGCC GCCGCCGTCT CGACGAATAT GCTCTACCAA TGTCTGACGA        300
CCAATTCCAT CACCCGCCGC CTCCTTCTTC AATGAGGCAC CGTTCTACGT CGGATGCGGC        360
GGACGGCGGC TGCGGCGAGA TTGTTGAGGT GCAAGGTGGT CACATTGTTC GGTCTACCGG        420
AAGAAAAGAC CGCCACAGCA AAGTCTGCAC GGCTAAAGGG CCACGTGACC GGCGCGTGAG        480
ACTCTCTGCT CACACGGCGA TTCAGTTTTA CGATGTTCAA GACAGGCTTG GTTTCGACCG        540
ACCTAGCAAA GCCGTTGATT GGCTTATCAA AAAGGCTAAG ACTTCCATTG ACGAGCTCGC        600
TGAGCTTCCT CCCTGGAATC CCGCCGATGC AATTCGCCTA GCCGCTGCTA ACGCTAAACC        660
CAGAAGAACC ACCGCCAAAA CCCAAATCTC TCCGTCTCCG CCACCGCCGC AACAGCAACA        720
ACAACAACAA CAGCTTCAGT TCGGTGTTGG CTTCAACGGA GGAGGAGCAG AGCATCCGAG        780
TAACAACGAG TCGAGTTTTC TCCCGCCGTC AATGGATTCA GATTCGATAG CTGACACTAT        840
AAAGTCGTTT TTTCCGGTGA TTGGCTCTTC AACGGAGGCT CCTTCGAATC ATAACCTTAT        900
GCACAACTAT CATCATCAGC ATCCGCCGGA TTTGCTTTCT CGAACTAATA GCCAAAACCA        960
AGATCTCCGT CTCTCGCTGC AATCGTTCCC GGATGGTCCA CCGTCGCTTC TGCACCACCA       1020
ACATCACCAC CACACCTCTG CTTCCGCCTC CGAGCCTACT CTGTTCTACG GACAGAGCAA       1080
TCCGTTAGGG TTTGACACAT CGAGTTGGGA GCAGCAGTCG TCGGAATTCG GAAGGATTCA       1140
GAGACTAGTG GCTTGGAACA GCGGCGGTGG CGGCGGAGCA ACCGATACAG GAAACGGAGG       1200
AGGGTTTCTG TTCGCTCCTC CTACTCCTTC AACGACGTCG TTTCAGCCAG TTCTTGGCCA       1260
AAGCCAACAG CTTTATTCTC AGAGGGGTCC CCTTCAGTCC AGTTACAGTC CCATGATCCG       1320
TGCTTGGTTT GATCCTCACC ATCATCACCA ATCCATCTCC ACCGACGATC TCAACCACCA       1380
CCATCACCTT CCTCCACCGG TTCACCAATC AGCAATCCCC GGAATCGGAT TCGCCTCAGG       1440
TGAATTCTCT TCGGGTTTTC GCATACCAGC ACGGTTTCAG GGCCAAGAAG AGGAGCAGCA       1500
CGACGGTCTC ACTCACAAGC CGTCCTCTGC TTCCTCTATT TCTCGCCATT GACAATCGAA       1560
ACTAATCCTC TAAGTTTCAG CTTCCATGCA CATTGAAGCT TGACTTAGAT TGTCCGGAAC       1620
AGGGAAGGTG TTCTCGGTTT GTGTAGTCAA TGGCCTGAAT CTAGAAAACG CAAGGAAATG       1680
AAGAAAGAAC AACAGTTTCA GGTTCTTCTT CTTCTTCTTC CAATATCTTA ACCTTGCCGA       1740
TTGTAATTTT TCATATTTTC ACCAGTTAGA CCAACGTTCT TCTGTAGCTC AATTATGGTT       1800
AGATTCCAAG GTTTCGTCTT GTTGTGTTAT GTTTGTAACT TTGTATCATC ATCATCCTAT       1860
TGTTACTGCT CCCTGTTCTT ATTGTGTAAC TCCGTGGATG TTCTAATAAA GTCTGAAACT       1920
TTCTCTT                                                                 1927

	SNP	left flanking [allel] right flanking
	SNP275955	AGCTTCCTCC[C/C]TGGAATCCCG
	SNP275957	CAGCCAGTTC[T/T]TGGCCAAAGC

Sequence: AT3G15030.2

submitter of sequence:	public data
length:	2020
description:	genomic sequence (TAIR 7.0)

AT3G15030.2
CTTCATCTCT TTGGTCTCCT TCTTGCGTTT TCTATTTACT ACACAGACCA AACAATAGAG         60
AGAGACTTTA AGCTATAGAA AAAAAGAGAG AGATTCTCTC AAATATGGGT TAGTCCACAA        120
TTTTCACTAA ACCTCTTCTT CTTAGGATTG TTTTTAGGGT TAGGGTTTTG AGGTGAGGAG        180
AGCAAGTATG CGGGAGTTTC ATCCTTTTTG AGTTACTCTG GATTCCTCAC CCTCTAACGA        240
CGACCACCGT CGCCGCCGCC GCCGCCGTCT CGACGAATAT GCTCTACCAA TGTCTGACGA        300
CCAATTCCAT CACCCGCCGC CTCCTTCTTC AATGAGGCAC CGTTCTACGT CGGATGCGGC        360
GGACGGCGGC TGCGGCGAGA TTGTTGAGGT GCAAGGTGGT CACATTGTTC GGTCTACCGG        420
AAGAAAAGAC CGCCACAGCA AAGTCTGCAC GGCTAAAGGG CCACGTGACC GGCGCGTGAG        480
ACTCTCTGCT CACACGGCGA TTCAGTTTTA CGATGTTCAA GACAGGCTTG GTTTCGACCG        540
ACCTAGCAAA GCCGTTGATT GGCTTATCAA AAAGGCTAAG ACTTCCATTG ACGAGCTCGC        600
TGAGCTTCCT CCCTGGAATC CCGCCGATGC AATTCGCCTA GCCGCTGCTA ACGCTAAACC        660
CAGAAGAACC ACCGCCAAAA CCCAAATCTC TCCGTCTCCG CCACCGCCGC AACAGCAACA        720
ACAACAACAA CAGCTTCAGT TCGGTGTTGG CTTCAACGGA GGAGGAGCAG AGCATCCGAG        780
TAACAACGAG TCGAGTTTTC TCCCGCCGTC AATGGATTCA GATTCGATAG CTGACACTAT        840
AAAGTCGTTT TTTCCGGTGA TTGGCTCTTC AACGGAGGCT CCTTCGAATC ATAACCTTAT        900
GCACAACTAT CATCATCAGC ATCCGCCGGA TTTGCTTTCT CGAACTAATA GCCAAAACCA        960
AGATCTCCGT CTCTCGCTGC AATCGTTCCC GGATGGTCCA CCGTCGCTTC TGCACCACCA       1020
ACATCACCAC CACACCTCTG CTTCCGCCTC CGAGCCTACT CTGTTCTACG GACAGAGCAA       1080
TCCGTTAGGG TTTGACACAT CGAGTTGGGA GCAGCAGTCG TCGGAATTCG GAAGGATTCA       1140
GAGACTAGTG GCTTGGAACA GCGGCGGTGG CGGCGGAGCA ACCGATACAG GAAACGGAGG       1200
AGGGTTTCTG TTCGCTCCTC CTACTCCTTC AACGACGTCG TTTCAGCCAG TTCTTGGCCA       1260
AAGCCAACAG CTTTATTCTC AGAGGGGTCC CCTTCAGTCC AGTTACAGTC CCATGATCCG       1320
TGCTTGGTTT GATCCTCACC ATCATCACCA ATCCATCTCC ACCGACGATC TCAACCACCA       1380
CCATCACCTT CCTCCACCGG TTCACCAATC AGCAATCCCC GGAATCGGAT TCGCCTCAGG       1440
TGAATTCTCT TCGGGTTTTC GCATACCAGC ACGGTTTCAG GGCCAAGAAG AGGAGCAGCA       1500
CGACGGTCTC ACTCACAAGC CGTCCTCTGC TTCCTCTATT TCTCGCCATT GACAATCGAA       1560
ACTAATCCTC TAAGTTTCAG GTTTATCTCA AGTTCTGTCC TTTTACATCA AATTCACTAC       1620
TTTTGTACTT CTTTGGTCAT TGAACTTTAA ACCATTTTGC AGGGCTTGTC TAGCTTCCAT       1680
GCACATTGAA GCTTGACTTA GATTGTCCGG AACAGGGAAG GTGTTCTCGG TTTGTGTAGT       1740
CAATGGCCTG AATCTAGAAA ACGCAAGGAA ATGAAGAAAG AACAACAGTT TCAGGTTCTT       1800
CTTCTTCTTC TTCCAATATC TTAACCTTGC CGATTGTAAT TTTTCATATT TTCACCAGTT       1860
AGACCAACGT TCTTCTGTAG CTCAATTATG GTTAGATTCC AAGGTTTCGT CTTGTTGTGT       1920
TATGTTTGTA ACTTTGTATC ATCATCATCC TATTGTTACT GCTCCCTGTT CTTATTGTGT       1980
AACTCCGTGG ATGTTCTAAT AAAGTCTGAA ACTTTCTCTT                             2020

Sequence: AT3G15030.2

submitter of sequence:	public data
length:	1263
description:	coding sequence (TAIR 7.0)

AT3G15030.2
ATGTCTGACG ACCAATTCCA TCACCCGCCG CCTCCTTCTT CAATGAGGCA CCGTTCTACG         60
TCGGATGCGG CGGACGGCGG CTGCGGCGAG ATTGTTGAGG TGCAAGGTGG TCACATTGTT        120
CGGTCTACCG GAAGAAAAGA CCGCCACAGC AAAGTCTGCA CGGCTAAAGG GCCACGTGAC        180
CGGCGCGTGA GACTCTCTGC TCACACGGCG ATTCAGTTTT ACGATGTTCA AGACAGGCTT        240
GGTTTCGACC GACCTAGCAA AGCCGTTGAT TGGCTTATCA AAAAGGCTAA GACTTCCATT        300
GACGAGCTCG CTGAGCTTCC TCCCTGGAAT CCCGCCGATG CAATTCGCCT AGCCGCTGCT        360
AACGCTAAAC CCAGAAGAAC CACCGCCAAA ACCCAAATCT CTCCGTCTCC GCCACCGCCG        420
CAACAGCAAC AACAACAACA ACAGCTTCAG TTCGGTGTTG GCTTCAACGG AGGAGGAGCA        480
GAGCATCCGA GTAACAACGA GTCGAGTTTT CTCCCGCCGT CAATGGATTC AGATTCGATA        540
GCTGACACTA TAAAGTCGTT TTTTCCGGTG ATTGGCTCTT CAACGGAGGC TCCTTCGAAT        600
CATAACCTTA TGCACAACTA TCATCATCAG CATCCGCCGG ATTTGCTTTC TCGAACTAAT        660
AGCCAAAACC AAGATCTCCG TCTCTCGCTG CAATCGTTCC CGGATGGTCC ACCGTCGCTT        720
CTGCACCACC AACATCACCA CCACACCTCT GCTTCCGCCT CCGAGCCTAC TCTGTTCTAC        780
GGACAGAGCA ATCCGTTAGG GTTTGACACA TCGAGTTGGG AGCAGCAGTC GTCGGAATTC        840
GGAAGGATTC AGAGACTAGT GGCTTGGAAC AGCGGCGGTG GCGGCGGAGC AACCGATACA        900
GGAAACGGAG GAGGGTTTCT GTTCGCTCCT CCTACTCCTT CAACGACGTC GTTTCAGCCA        960
GTTCTTGGCC AAAGCCAACA GCTTTATTCT CAGAGGGGTC CCCTTCAGTC CAGTTACAGT       1020
CCCATGATCC GTGCTTGGTT TGATCCTCAC CATCATCACC AATCCATCTC CACCGACGAT       1080
CTCAACCACC ACCATCACCT TCCTCCACCG GTTCACCAAT CAGCAATCCC CGGAATCGGA       1140
TTCGCCTCAG GTGAATTCTC TTCGGGTTTT CGCATACCAG CACGGTTTCA GGGCCAAGAA       1200
GAGGAGCAGC ACGACGGTCT CACTCACAAG CCGTCCTCTG CTTCCTCTAT TTCTCGCCAT       1260
TGA                                                                     1263