GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT3G12250.5

Alternative name:AT3G12250

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

TGA6 (TGA1a-related gene 6) (TAIR 7.0)

TGA6 (TGA1a-related gene 6); DNA binding / transcription factor basic leucine zipper transcription factor involved in the activation of SA-responsive genes. Identical to Transcription factor TGA6 (AtbZIP45) (TGA6) [Arabidopsis Thaliana] (GB:Q39140;GB:Q9C7D1;GB:Q9LHI1); similar to AHBP-1B (bZIP transcription factor HBP-1b homolog) [Arabidopsis thaliana] (TAIR:AT5G06950.4); similar to leucine zipper (GB:AAC37470.1); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) (MapMan)

Gene Ontology

GO term	Identifier	Type
systemic acquired resistance	GO:0009627	biological process
DNA binding	GO:0003677	molecular function
transcription factor activity	GO:0003700	molecular function

MapMan Annotation:
BIN 27.3.35:	RNA.regulation of transcription.bZIP transcription factor family
BIN 27.3:	RNA.regulation of transcription
BIN 27:	RNA

Related with

181F23T7	cDNA clone
REGIo476H047D	cDNA clone
REGIo476A082D	cDNA clone
REGIo476A112D	cDNA clone
MSU_p955I2213	cDNA clone
MPMGp2011K03207	cDNA clone
256269_at	Affymetrix representative on ATH1-121501

Orthologues and co-orthologues identified by INPARANOID

AT5G06950.3	Arabidopsis thaliana
AT5G06950.4	Arabidopsis thaliana
AT5G06950.1	Arabidopsis thaliana
AT5G06950.2	Arabidopsis thaliana

In vitro kinase assay on protein microarray

The recombinant protein expressed by this clone is an in vitro substrate for the protein kinase(s):

AT1G18150.2	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT1G18150.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804
AT2G43790.1	Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP2009. Genes Dev. PMID:19095804

External resources

Arabidopsis eFP browser

Sequence: AT3G12250.5

submitter of sequence:	public data
length:	304
description:	amino acid sequence (TAIR 7.0)

AT3G12250.5
MHAAASDSSD RSKDKLDQKT LRRLAQNREA ARKSRLRKKA YVQQLENSRL KLTQLEQELQ         60
RARQQGVFIS SSGDQAHSTG GNGALAFDAE HSRWLEEKNR QMNELRSALN AHAGDTELRI        120
IVDGVMAHYE ELFRIKSNAA KNDVFHLLSG MWKTPAERCF LWLGGFRSSE LLKLLANQLE        180
PMTERQVMGI NSLQQTSQQA EDALSQGMES LQQSLADTLS SGTLGSSSSD NVASYMGQMA        240
MAMGQLGTLE GFIRQADNLR LQTLQQMLRV LTTRQSARAL LAIHDYSSRL RALSSLWLAR        300
PRE*                                                                     304

Sequence: AT3G12250.5

submitter of sequence:	public data
length:	1663
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT3G12250.5
TTTCAATCCG ATTTCGGACA ACCTTTTACT CAGACAGGAG ATTTCAGTTT TTTTCAGTGT         60
GACTTAAGCT GGTTTCCGTG AGCCAATAAC TTGATACTTC TTTTCCTCCC TCTAGTGTGA        120
AACTCTGCAC CAGAGGTGAA AGGTTATCAT TGCAAAAGGG AGCACAAGTG GATAGTGTTT        180
GCTCAAGTAT TAGTACAGAA ACTAGTATGG CTGATACCAG TTCAAGGACT GATGTCTCAA        240
CTGATGGTGA CACAGATCAT AGAGATCTGG GGGTTAGCTC GTAATCTGGC TCTAATCATT        300
TTATAGTTTT ATTATCTCTA CAATGTCACT CCTGGGAGGC TTGTACCGGA ATCCCTTGGT        360
AAAACTTGGG GCATTCTACC GTCTGATAGA GGGCATATGC ATGCTGCTGC CTCTGATTCC        420
AGTGATCGAT CAAAGGATAA GTTGGATCAA AAGACCCTTC GTAGGCTTGC TCAAAATCGT        480
GAGGCAGCAA GAAAAAGCAG ATTGAGGAAG AAGGCGTATG TTCAGCAGCT GGAGAATAGT        540
CGATTAAAGC TGACTCAACT TGAGCAGGAG CTGCAAAGAG CAAGACAGCA GGGAGTTTTC        600
ATCTCAAGTT CAGGAGACCA AGCTCATTCT ACTGGTGGCA ATGGGGCTTT GGCATTTGAT        660
GCAGAACACT CACGATGGCT TGAAGAAAAG AACAGGCAAA TGAACGAGCT GAGATCTGCC        720
CTGAATGCTC ATGCAGGTGA TACTGAGCTC CGGATAATTG TGGATGGAGT GATGGCTCAC        780
TATGAGGAGC TTTTCAGGAT TAAGAGCAAT GCAGCTAAGA ATGATGTCTT CCACTTGTTA        840
TCTGGAATGT GGAAAACACC AGCTGAGCGA TGTTTCTTGT GGCTTGGCGG GTTCCGCTCA        900
TCCGAACTTC TCAAGCTTCT TGCGAATCAG CTAGAGCCCA TGACAGAACG ACAGGTAATG        960
GGCATCAATA GCTTGCAGCA GACGTCGCAG CAGGCAGAAG ATGCTTTATC TCAAGGGATG       1020
GAGAGTTTAC AGCAATCCCT AGCTGATACT TTATCCAGTG GAACTCTTGG TTCCAGTTCA       1080
TCGGATAATG TCGCGAGCTA CATGGGTCAG ATGGCCATGG CAATGGGGCA GTTAGGCACC       1140
CTCGAAGGAT TCATACGCCA GGCTGATAAC TTGAGGCTGC AAACACTACA ACAGATGCTT       1200
CGAGTATTAA CAACACGTCA GTCAGCTCGT GCTCTTCTTG CTATACACGA TTATTCATCT       1260
CGATTACGTG CTCTTAGTTC CTTGTGGCTT GCCCGGCCAA GAGAGTGAAA CAGAAGAATA       1320
GTGCTCTACT CAGCAGTCAG CCCTATACAT AATCTTATGA CTCAGATCGG CAGGGATACT       1380
CCTTCCAAGA GATCGATCAC AAAGCAAGGC ATTCTCAGAT TCTTACCAAA AGCAATATTT       1440
TGGGAAAGAA GACTGCAGGT TTTGAAATTG GTTTCCTGAG GTCCGCAAGA CTCGAGTGTT       1500
GTGTGTGTTG TAATTTTTAG CCATCAGGTT GCATAGTTTT ATAGAGTGAA TGTTTATAGG       1560
TCTTTGAATA TTCAAAGCGG ATAGGTGATC AGTGTAAGGT CGCAATTACC AACATGACAG       1620
AAGATGGGAT CCTTTCAGGA ACTTGGATTG TATGATCATA AAC                         1663

	SNP	left flanking [allel] right flanking
	SNP278318	GCGGGTTCCG[C/C]TCATCCGAAC
	SNP278323	TAGGCACCCT[C/C]GAAGGATTCA
	SNP278328	CACTACAACA[G/G]ATGCTTCGAG

Sequence: AT3G12250.5

submitter of sequence:	public data
length:	3375
description:	genomic sequence (TAIR 7.0)

AT3G12250.5
TTTCAATCCG ATTTCGGACA ACCTTTTACT CAGACAGGAG ATTTCAGTTT TTTTCAGGTG         60
AGCTTCTTGC TTTCTGCAAC TCAAGCTCTT TTGTTTTTTG GGTTTTGTTT CTTTCCTTTT        120
TCTTTTCTTT TTCTTTTGTT TGAAGTTTCC TCCTTCTTTG TTTTACTTTA GTCATTGGAA        180
AGCTTACTTT TTCTCACTTT GTGATTTGCC TTTGGAAATT AAGACTTAGT TGACTTTCAG        240
AAGCTTATAA AGTTTCAAGT TTTTTTTGTT CATTTGATGA CGTTTTCAGC AACCAAATTC        300
CATCGAATTA TCTTGATGAA TCCTTATGGA TTTCAAATGT TAGTATGCTT TGAATTTCAT        360
GTGTCTGTTG AATTCTGTTA AGAGTCATAG ATTTTGAATC CTTGGTGATG AGTTATTGGT        420
TTGAGTGATC AGCTGCTATA AGCTTAGTTC TCGCTTGTGT TATAAGCTTA GTTCTCGCTT        480
GTGTTAGATT TTGAATCCGC TGTTTTGTTT CAGTCCATGT TAGTACTTGA ACCGTTGTCT        540
TGCAGTGTGA CTTAAGCTGG TTTCCGTGAG CCAATAACTT GATACTTGTG AGTGTGCCCA        600
AATTCCAAAC TGATGCAGTT CTCTCTCTCT GCTATCTGTT AATTTCTTTC ATAATCATCT        660
TTTCTCTTTC CTCTTGGCAG CTTTTCCTCC CTCTAGTGTG AAACTCTGCA CCAGAGGTGA        720
AAGGTTATCA TTGCAAAAGG GAGCACAAGT GGATAGTGTT TGCTCAAGTA TTAGTACAGA        780
AACTAGTATG GCTGATACCA GTTCAAGGAC TGATGTCTCA ACTGATGGTG ACACAGATCA        840
TAGAGATCTG GGGGTTAGCT CGTAATCTGG CTCTAATCAT TTTATAGTTT TATTATCTCT        900
ACAATGTCAC TCCTGGGAGG CTTGTACCGG AATCCCTTGG TAAAACTTGG GGCATTCTAC        960
CGGTATAGCC AAATCCACAG GACTAGTCAT TTGCTTATGT TCATCAAACA TGCATAGTTT       1020
GAATGAAACA GTAATTCCTG ATGTTGATTA CATGCAGTCT GATAGAGGGC ATATGCATGC       1080
TGCTGCCTCT GATTCCAGTG ATCGATCAAA GGATAAGTTG GATCAAAAGG TGATAGATTC       1140
ATCTCTGTGG ATCAACTAGC ATCTGTGTAT ATTACGCATA TGCATAATCT GTTTTGTTTC       1200
CTTTTCGTTT TGATCCATAG ACCCTTCGTA GGCTTGCTCA AAATCGTGAG GCAGCAAGAA       1260
AAAGCAGATT GAGGAAGAAG GTATGTATAT TTTGCTTTTG TTCTTGTTTT GATTTTTCTT       1320
ATATATTCCT CTTATTTCCT TGTAATATCT CTAGAAGAAT ATCTATCTGT CATTACCTTA       1380
AGCATGTTAT TGTTTCCTCC ATAGGCGTAT GTTCAGCAGC TGGAGAATAG TCGATTAAAG       1440
CTGACTCAAC TTGAGCAGGA GCTGCAAAGA GCAAGACAGC AGGTTTATTA ACTTTCTTAT       1500
TTGTTTTGAT TCTGATATGT ATGTCTTTAT AAAGAAGATA AAAGGCTGAA GCTACTTCAA       1560
CTTATAACTA ACAGTCAGTT ACGAGTTAGT ACTAGTCTTG GGTTAGCTGA AGTAGAGGAG       1620
GTAACAGAAT TATGGGTCAT CCATAGTTTA GTTGGGTAAA AGTAGCTGGT AACTCTCTCG       1680
AAATAGGTCC TTCTGGTCTG TTTATTCGGA TGTTGATGGC ATACAGAGAA TTTCTATTCT       1740
GGTTCTTATC AGATTCTTTG TCATGACTCA TGACAGTGTA TTTGTCACTT AAGGATATAT       1800
ATTTTTCAAT TTTAGGGAGT TTTCATCTCA AGTTCAGGAG ACCAAGCTCA TTCTACTGGT       1860
GGCAATGGTG GGTTGTTTCT TCTCTGTTAG TTTTGAGATT GATCCTTTTG ATTTGAAATT       1920
TCTATGTGAG ATAAGTGCAT ATATACATAT ATGTTGATGA ATTGGTGATA GCATAAGTCA       1980
TCTCATGGCA ATATGCTTAC ACTTGTTAGA GTTAATGGTT TCAAGAGTCA GTGATGATCT       2040
GGATGGGAAA TTAAAGTCAT GGTGATGTCA AAACTGAAGT TTCTTATAGT TTGCGCTGGT       2100
GTTAGCTTAG GTCTGCAAGG GTTTGTTCTT GATCTAGTAT ACTTGCCTTT CTGCAGGGGC       2160
TTTGGCATTT GATGCAGAAC ACTCACGATG GCTTGAAGAA AAGAACAGGC AAATGAACGA       2220
GCTGAGATCT GCCCTGAATG CTCATGCAGG TGATACTGAG CTCCGGATAA TTGTGGATGG       2280
AGTGATGGCT CACTATGAGG AGCTTTTCAG GATTAAGAGC AATGCAGCTA AGAATGATGT       2340
CTTCCACTTG TTATCTGGAA TGTGGAAAAC ACCAGCTGAG CGATGTTTCT TGTGGCTTGG       2400
CGGGTTCCGC TCATCCGAAC TTCTCAAGGT AAGCTCTTTC CAAGTCCATA GAGAGATTTT       2460
GATGAACAGC CAACTTAATG AGTCGCAGTG TTTTCACAAC AGCTTCTTGC GAATCAGCTA       2520
GAGCCCATGA CAGAACGACA GGTAATGGGC ATCAATAGCT TGCAGCAGAC GTCGCAGCAG       2580
GCAGAAGATG CTTTATCTCA AGGGATGGAG AGTTTACAGC AATCCCTAGC TGATACTTTA       2640
TCCAGTGGAA CTCTTGGTTC CAGTTCATCG GATAATGTCG CGAGCTACAT GGGTCAGATG       2700
GCCATGGCAA TGGGGCAGTT AGGCACCCTC GAAGGATTCA TACGCCAGGT ACTTTAGAAA       2760
TGTGGATGTT ATCGAGATAT ACCATATCTT TTCATCGTCA CAAAGAGATA AATATTTTAT       2820
TTTATATATG AATCCGTCTG TTATGGAGTT CATAGGGCAT TTCTTGGTGG CAGGCTGATA       2880
ACTTGAGGCT GCAAACACTA CAACAGATGC TTCGAGTATT AACAACACGT CAGTCAGCTC       2940
GTGCTCTTCT TGCTATACAC GATTATTCAT CTCGATTACG TGCTCTTAGT TCCTTGTGGC       3000
TTGCCCGGCC AAGAGAGTGA AACAGAAGAA TAGTGCTCTA CTCAGCAGTC AGCCCTATAC       3060
ATAATCTTAT GACTCAGATC GGCAGGGATA CTCCTTCCAA GAGATCGATC ACAAAGCAAG       3120
GCATTCTCAG ATTCTTACCA AAAGCAATAT TTTGGGAAAG AAGACTGCAG GTTTTGAAAT       3180
TGGTTTCCTG AGGTCCGCAA GACTCGAGTG TTGTGTGTGT TGTAATTTTT AGCCATCAGG       3240
TTGCATAGTT TTATAGAGTG AATGTTTATA GGTCTTTGAA TATTCAAAGC GGATAGGTGA       3300
TCAGTGTAAG GTCGCAATTA CCAACATGAC AGAAGATGGG ATCCTTTCAG GAACTTGGAT       3360
TGTATGATCA TAAAC                                                        3375

Sequence: AT3G12250.5

submitter of sequence:	public data
length:	912
description:	coding sequence (TAIR 7.0)

AT3G12250.5
ATGCATGCTG CTGCCTCTGA TTCCAGTGAT CGATCAAAGG ATAAGTTGGA TCAAAAGACC         60
CTTCGTAGGC TTGCTCAAAA TCGTGAGGCA GCAAGAAAAA GCAGATTGAG GAAGAAGGCG        120
TATGTTCAGC AGCTGGAGAA TAGTCGATTA AAGCTGACTC AACTTGAGCA GGAGCTGCAA        180
AGAGCAAGAC AGCAGGGAGT TTTCATCTCA AGTTCAGGAG ACCAAGCTCA TTCTACTGGT        240
GGCAATGGGG CTTTGGCATT TGATGCAGAA CACTCACGAT GGCTTGAAGA AAAGAACAGG        300
CAAATGAACG AGCTGAGATC TGCCCTGAAT GCTCATGCAG GTGATACTGA GCTCCGGATA        360
ATTGTGGATG GAGTGATGGC TCACTATGAG GAGCTTTTCA GGATTAAGAG CAATGCAGCT        420
AAGAATGATG TCTTCCACTT GTTATCTGGA ATGTGGAAAA CACCAGCTGA GCGATGTTTC        480
TTGTGGCTTG GCGGGTTCCG CTCATCCGAA CTTCTCAAGC TTCTTGCGAA TCAGCTAGAG        540
CCCATGACAG AACGACAGGT AATGGGCATC AATAGCTTGC AGCAGACGTC GCAGCAGGCA        600
GAAGATGCTT TATCTCAAGG GATGGAGAGT TTACAGCAAT CCCTAGCTGA TACTTTATCC        660
AGTGGAACTC TTGGTTCCAG TTCATCGGAT AATGTCGCGA GCTACATGGG TCAGATGGCC        720
ATGGCAATGG GGCAGTTAGG CACCCTCGAA GGATTCATAC GCCAGGCTGA TAACTTGAGG        780
CTGCAAACAC TACAACAGAT GCTTCGAGTA TTAACAACAC GTCAGTCAGC TCGTGCTCTT        840
CTTGCTATAC ACGATTATTC ATCTCGATTA CGTGCTCTTA GTTCCTTGTG GCTTGCCCGG        900
CCAAGAGAGT GA                                                            912