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Gene: AT2G40350.1


  Alternative name:AT2G40350

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
DNA binding / transcription factor (TAIR 7.0)
DNA binding / transcription factor encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. Identical to Putative dehydration-responsive element-binding protein 2H (DREB2H protein) (DREB2H) [Arabidopsis Thaliana] (GB:Q9SIZ0); similar to AP2 domain-containing transcription factor, putative (DRE2B) [Arabidopsis thaliana] (TAIR:AT2G40340.1); similar to Putative dehydration-responsive element-binding protein 2H (DREB2H protein) (GB:Q9SIZ0); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) (MapMan)

Gene Ontology
GO termIdentifierType
heat acclimationGO:0010286biological process
regulation of transcription, DNA-dependentGO:0006355biological process
DNA bindingGO:0003677molecular function
transcription factor activityGO:0003700molecular function
nucleusGO:0005634cellular component
MapMan Annotation:
BIN  27.3.3: RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family
BIN  27.3: RNA.regulation of transcription
BIN  27: RNA

Related with
263823_s_at Affymetrix representative on ATH1-121501

Orthologues and co-orthologues identified by INPARANOID
AT2G40340.1 Arabidopsis thaliana
LOC_Os05g27930.1 Oryza sativa japonica

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
MapCave
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
SLocX
iHOP (AT2G40350)
 
Sequence: AT2G40350.1
submitter of sequence: public data
length: 158
description: amino acid sequence (TAIR 7.0) 
AT2G40350.1
MPRKRKSRGT RDVAEILRKW REYNEQTEAD SCIDGGGSKP IRKAPPKRSR KGCMKGKGGP         60
ENGICDYTGV RQRTWGKWVA EIREPGRGAK LWLGTFSSSY EAALAYDEAS KAIYGQSARL        120
NLPLLPLCQA RLLHFLMNLK FVHVRIQMQD LVLVRSD*                                158
 
Sequence: AT2G40350.1
submitter of sequence: public data
length: 474
description: cdna sequence (TAIR 7.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
AT2G40350.1
ATGCCCAGGA AACGGAAGTC TCGTGGAACA CGAGATGTAG CTGAGATTCT AAGGAAATGG         60
AGAGAGTACA ATGAGCAGAC CGAGGCAGAT TCTTGCATCG ATGGTGGTGG TTCAAAACCA        120
ATCCGAAAGG CTCCTCCAAA ACGTTCGAGG AAGGGTTGTA TGAAAGGTAA AGGTGGACCT        180
GAAAATGGGA TTTGTGACTA TACAGGAGTT AGACAGAGGA CATGGGGTAA ATGGGTTGCT        240
GAGATCCGTG AGCCAGGCCG AGGTGCTAAG TTATGGCTCG GTACTTTCTC TAGTTCATAT        300
GAAGCTGCAT TGGCTTATGA TGAGGCTTCC AAAGCTATTT ACGGTCAGTC TGCCCGACTC        360
AATCTTCCAC TGCTGCCACT GTGTCAGGCT CGGTTACTGC ATTTTCTGAT GAATCTGAAG        420
TTTGTGCACG TGAGGATACA AATGCAAGAT CTGGTTTTGG TCAGGTCAGA CTAG              474
SNPleft flanking [allel] right flanking
SNP252697 AGAGAGTACA[A/A]TGAGCAGACC
SNP252696 GAAAATGGGA[T/T]TTGTGACTAT
 
Sequence: AT2G40350.1
submitter of sequence: public data
length: 474
description: coding sequence (TAIR 7.0) 
AT2G40350.1
ATGCCCAGGA AACGGAAGTC TCGTGGAACA CGAGATGTAG CTGAGATTCT AAGGAAATGG         60
AGAGAGTACA ATGAGCAGAC CGAGGCAGAT TCTTGCATCG ATGGTGGTGG TTCAAAACCA        120
ATCCGAAAGG CTCCTCCAAA ACGTTCGAGG AAGGGTTGTA TGAAAGGTAA AGGTGGACCT        180
GAAAATGGGA TTTGTGACTA TACAGGAGTT AGACAGAGGA CATGGGGTAA ATGGGTTGCT        240
GAGATCCGTG AGCCAGGCCG AGGTGCTAAG TTATGGCTCG GTACTTTCTC TAGTTCATAT        300
GAAGCTGCAT TGGCTTATGA TGAGGCTTCC AAAGCTATTT ACGGTCAGTC TGCCCGACTC        360
AATCTTCCAC TGCTGCCACT GTGTCAGGCT CGGTTACTGC ATTTTCTGAT GAATCTGAAG        420
TTTGTGCACG TGAGGATACA AATGCAAGAT CTGGTTTTGG TCAGGTCAGA CTAG              474

Gene: AT2G40350.1


  Alternative name:AT2G40350

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
DNA binding / transcription factor (TAIR 9.0)

Gene Ontology
GO termIdentifierType
heat acclimationGO:0010286biological process
regulation of transcription, DNA-dependentGO:0006355biological process
DNA bindingGO:0003677molecular function
transcription factor activityGO:0003700molecular function
nucleusGO:0005634cellular component

Related with
263823_s_at Affymetrix representative on ATH1-121501

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
MapCave
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
SLocX
iHOP (AT2G40350)
 
Sequence: AT2G40350.1
submitter of sequence: public data
length: 474
description: coding sequence (TAIR 9.0) 
AT2G40350.1
ATGCCCAGGA AACGGAAGTC TCGTGGAACA CGAGATGTAG CTGAGATTCT AAGGAAATGG         60
AGAGAGTACA ATGAGCAGAC CGAGGCAGAT TCTTGCATCG ATGGTGGTGG TTCAAAACCA        120
ATCCGAAAGG CTCCTCCAAA ACGTTCGAGG AAGGGTTGTA TGAAAGGTAA AGGTGGACCT        180
GAAAATGGGA TTTGTGACTA TACAGGAGTT AGACAGAGGA CATGGGGTAA ATGGGTTGCT        240
GAGATCCGTG AGCCAGGCCG AGGTGCTAAG TTATGGCTCG GTACTTTCTC TAGTTCATAT        300
GAAGCTGCAT TGGCTTATGA TGAGGCTTCC AAAGCTATTT ACGGTCAGTC TGCCCGACTC        360
AATCTTCCAC TGCTGCCACT GTGTCAGGCT CGGTTACTGC ATTTTCTGAT GAATCTGAAG        420
TTTGTGCACG TGAGGATACA AATGCAAGAT CTGGTTTTGG TCAGGTCAGA CTAG              474
 
Sequence: AT2G40350.1
submitter of sequence: public data
length: 158
description: amino acid sequence (TAIR 9.0) 
AT2G40350.1
MPRKRKSRGT RDVAEILRKW REYNEQTEAD SCIDGGGSKP IRKAPPKRSR KGCMKGKGGP         60
ENGICDYTGV RQRTWGKWVA EIREPGRGAK LWLGTFSSSY EAALAYDEAS KAIYGQSARL        120
NLPLLPLCQA RLLHFLMNLK FVHVRIQMQD LVLVRSD*                                158
 
Sequence: AT2G40350.1
submitter of sequence: public data
length: 474
description: cdna sequence (TAIR 9.0)
Sequence features and Clone alignments (BLAST):
Click for Menu Click for Menu

Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
AT2G40350.1
ATGCCCAGGA AACGGAAGTC TCGTGGAACA CGAGATGTAG CTGAGATTCT AAGGAAATGG         60
AGAGAGTACA ATGAGCAGAC CGAGGCAGAT TCTTGCATCG ATGGTGGTGG TTCAAAACCA        120
ATCCGAAAGG CTCCTCCAAA ACGTTCGAGG AAGGGTTGTA TGAAAGGTAA AGGTGGACCT        180
GAAAATGGGA TTTGTGACTA TACAGGAGTT AGACAGAGGA CATGGGGTAA ATGGGTTGCT        240
GAGATCCGTG AGCCAGGCCG AGGTGCTAAG TTATGGCTCG GTACTTTCTC TAGTTCATAT        300
GAAGCTGCAT TGGCTTATGA TGAGGCTTCC AAAGCTATTT ACGGTCAGTC TGCCCGACTC        360
AATCTTCCAC TGCTGCCACT GTGTCAGGCT CGGTTACTGC ATTTTCTGAT GAATCTGAAG        420
TTTGTGCACG TGAGGATACA AATGCAAGAT CTGGTTTTGG TCAGGTCAGA CTAG              474
 
Sequence: AT2G40350.1
submitter of sequence: public data
length: 474
description: genomic sequence (TAIR 9.0) 
AT2G40350.1
ATGCCCAGGA AACGGAAGTC TCGTGGAACA CGAGATGTAG CTGAGATTCT AAGGAAATGG         60
AGAGAGTACA ATGAGCAGAC CGAGGCAGAT TCTTGCATCG ATGGTGGTGG TTCAAAACCA        120
ATCCGAAAGG CTCCTCCAAA ACGTTCGAGG AAGGGTTGTA TGAAAGGTAA AGGTGGACCT        180
GAAAATGGGA TTTGTGACTA TACAGGAGTT AGACAGAGGA CATGGGGTAA ATGGGTTGCT        240
GAGATCCGTG AGCCAGGCCG AGGTGCTAAG TTATGGCTCG GTACTTTCTC TAGTTCATAT        300
GAAGCTGCAT TGGCTTATGA TGAGGCTTCC AAAGCTATTT ACGGTCAGTC TGCCCGACTC        360
AATCTTCCAC TGCTGCCACT GTGTCAGGCT CGGTTACTGC ATTTTCTGAT GAATCTGAAG        420
TTTGTGCACG TGAGGATACA AATGCAAGAT CTGGTTTTGG TCAGGTCAGA CTAG              474
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