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Gene: AT1G50640.1


  Alternative name:ERF3
  Alternative name:ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3
  Alternative name:ATERF3
  Alternative name:AT1G50640

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
ATERF3/ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcriptional repressor (TAIR 7.0)
ATERF3/ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-3). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Identical to Ethylene-responsive transcription factor 3 (Ethylene-responsive element-binding factor 3) (EREBP-3) (AtERF3) (ERF3) [Arabidopsis Thaliana] (GB:O80339); similar to ERF7 (ETHYLINE RESPONSE FACTOR7), DNA binding / protein binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT3G20310.1); similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element-binding factor 3 homolog) (EREBP-5) (NtERF5) (GB:Q9SXS8); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) (MapMan)

Gene Ontology
GO termIdentifierType
negative regulation of ethylene mediated signaling pathwayGO:0010105biological process
regulation of transcription, DNA-dependentGO:0006355biological process
protein bindingGO:0005515molecular function
transcription repressor activityGO:0016564molecular function
DNA bindingGO:0003677molecular function
transcription factor activityGO:0003700molecular function
nucleusGO:0005634cellular component
MapMan Annotation:
BIN  17.5.2: hormone metabolism.ethylene.signal transduction
BIN  17.5: hormone metabolism.ethylene
BIN  17: hormone metabolism

Related with
MPIZp772K151Q cDNA clone
MPIZp771I104Q cDNA clone
REGIo476B102D cDNA clone
MPIZp772E076Q cDNA clone
MPIZp772H237Q cDNA clone
MPIZp768L021Q cDNA clone
261874_at Affymetrix representative on ATH1-121501

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
MapCave
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
SLocX
iHOP (ERF3)
iHOP (ATERF3)
iHOP (AT1G50640)
 
Sequence: AT1G50640.1
submitter of sequence: public data
length: 226
description: amino acid sequence (TAIR 7.0)
AT1G50640.1
MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA         60
EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI RNQNQNQVDP FMDHRLFTDH        120
QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI        180
DDDDDIASSS RRRNPPFQFD LNFPPLDCVD LFNGADDLHC TDLRL*                       226
 
Sequence: AT1G50640.1
submitter of sequence: public data
length: 1286
description: cdna sequence (TAIR 7.0)
Sequence features and Clone alignments (BLAST):
Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu

Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
AT1G50640.1
GCTTTTTGTG TTGAAGAGAG AGTTTCCTAT CTTCTCCATT CCTCCCACCA TCTCCCTCAT         60
CTTCATCTTC CTCTCTCTTT CTCTCTTTCT CAACAATCTC TATTAGATCT TTCTCCATTA        120
CCATTACCTC TGGCTTTCTC TTAAATCCAC CATCATGAGG AGAGGAAGAG GCTCTTCCGC        180
CGTCGCCGGA CCTACCGTCG TTGCCGCCAT CAACGGATCT GTAAAAGAAA TCAGATTCAG        240
AGGCGTAAGG AAGAGACCTT GGGGACGATT CGCAGCTGAG ATCCGTGATC CATGGAAAAA        300
AGCTCGTGTT TGGTTAGGTA CTTTCGATTC CGCCGAAGAA GCTGCTCGCG CTTACGACTC        360
CGCCGCTCGT AACCTCCGTG GTCCTAAAGC CAAAACTAAT TTCCCCATCG ATTCTTCTTC        420
TCCTCCTCCT CCTAATCTCC GATTTAATCA GATTCGTAAT CAAAATCAAA ACCAAGTCGA        480
TCCGTTTATG GACCACCGGT TATTCACCGA CCATCAACAA CAGTTCCCGA TTGTTAACCG        540
GCCTACTAGT AGCAGCATGA GCAGCACCGT TGAATCGTTT AGCGGACCCA GACCTACGAC        600
GATGAAACCG GCCACGACGA AGAGATATCC TAGAACTCCA CCGGTTGTTC CGGAGGATTG        660
TCACAGCGAT TGCGATTCGT CGTCGTCTGT AATCGACGAC GACGACGATA TCGCATCGTC        720
TTCACGGCGA CGGAATCCGC CGTTTCAATT CGATCTTAAT TTTCCACCGT TGGATTGTGT        780
TGACTTGTTC AATGGCGCTG ATGATCTTCA CTGTACCGAT CTACGTCTCT AATGAATTGG        840
TAAAATCAAA ATCAAAATCA CAGATCCGTG ATCGGTTTGA TTTTAATCGA AAACACACAA        900
CAAAATCCTT TTTTTTTTTT TTTTTAAATT TTCTGTTTCG TTGATCTCAT ATAATTTTTA        960
CTATGCGGGA GAAATAGAAA GACAAAGAAA CGAAGAAGAA GAAGAAGATG GTGATGAGCT       1020
TGAGAGAGCT TGAGCTGGTT CTGTGTTTCT TCTGTGATGA TATTGTAAGA GTATTATTAT       1080
TTTACTATTA TTACTAAATC TTCAAAACCA AGAAGAAGAA GACCGAACAC GATGATCTGT       1140
TGTGTCTGTT TGTTTTACTG TAAGAAAAAC GCAGATCTGG GTTTCGTTTT TTTCTTGAGA       1200
TAGATCAAAC AACCCCCATC TTTGTAACAT ATACATTTGG AACACTCATG ATTCTAAATA       1260
AAAAATCTAG AATCTTTTTT TCATCT                                            1286
	      
SNPleft flanking [allel] right flanking
SNP260042 AACAACAGTT[C/C]CCGATTGTTA
SNP260041 TTAGCGGACC[C/C]AGACCTACGA
SNP310285 AGAGATATCC[T/T]AGAACTCCAC
 
Sequence: AT1G50640.1
submitter of sequence: public data
length: 678
description: coding sequence (TAIR 7.0)
AT1G50640.1
ATGAGGAGAG GAAGAGGCTC TTCCGCCGTC GCCGGACCTA CCGTCGTTGC CGCCATCAAC         60
GGATCTGTAA AAGAAATCAG ATTCAGAGGC GTAAGGAAGA GACCTTGGGG ACGATTCGCA        120
GCTGAGATCC GTGATCCATG GAAAAAAGCT CGTGTTTGGT TAGGTACTTT CGATTCCGCC        180
GAAGAAGCTG CTCGCGCTTA CGACTCCGCC GCTCGTAACC TCCGTGGTCC TAAAGCCAAA        240
ACTAATTTCC CCATCGATTC TTCTTCTCCT CCTCCTCCTA ATCTCCGATT TAATCAGATT        300
CGTAATCAAA ATCAAAACCA AGTCGATCCG TTTATGGACC ACCGGTTATT CACCGACCAT        360
CAACAACAGT TCCCGATTGT TAACCGGCCT ACTAGTAGCA GCATGAGCAG CACCGTTGAA        420
TCGTTTAGCG GACCCAGACC TACGACGATG AAACCGGCCA CGACGAAGAG ATATCCTAGA        480
ACTCCACCGG TTGTTCCGGA GGATTGTCAC AGCGATTGCG ATTCGTCGTC GTCTGTAATC        540
GACGACGACG ACGATATCGC ATCGTCTTCA CGGCGACGGA ATCCGCCGTT TCAATTCGAT        600
CTTAATTTTC CACCGTTGGA TTGTGTTGAC TTGTTCAATG GCGCTGATGA TCTTCACTGT        660
ACCGATCTAC GTCTCTAA                                                      678

Gene: AT1G50640.1


  Alternative name:ERF3, ATERF3
  Alternative name:AT1G50640
  Alternative name:ATERF3
  Alternative name:ERF3
  Alternative name:ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription repressor (TAIR 9.0)

Gene Ontology
GO termIdentifierType
negative regulation of ethylene mediated signaling pathwayGO:0010105biological process
regulation of transcription, DNA-dependentGO:0006355biological process
protein bindingGO:0005515molecular function
transcription repressor activityGO:0016564molecular function
DNA bindingGO:0003677molecular function
transcription factor activityGO:0003700molecular function
nucleusGO:0005634cellular component

Related with
261874_at Affymetrix representative on ATH1-121501
MPIZp772H237Q cDNA clone
MPIZp772K151Q cDNA clone
MPIZp768L021Q cDNA clone
MPIZp771I104Q cDNA clone
MPIZp772E076Q cDNA clone
REGIo476B102D cDNA clone

Orthologues and co-orthologues identified by INPARANOID
AT5G64750.1 Arabidopsis thaliana
AT3G20310.1 Arabidopsis thaliana
CRE3_190235 Chlamydomonas reinhardtii
POPTR_0001s36610.1 Populus trichocarpa

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
MapCave
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
SLocX
iHOP (AT1G50640)
iHOP (ATERF3)
iHOP (ERF3)
 
Sequence: AT1G50640.1
submitter of sequence: public data
length: 678
description: coding sequence (TAIR 9.0)
AT1G50640.1
ATGAGGAGAG GAAGAGGCTC TTCCGCCGTC GCCGGACCTA CCGTCGTTGC CGCCATCAAC         60
GGATCTGTAA AAGAAATCAG ATTCAGAGGC GTAAGGAAGA GACCTTGGGG ACGATTCGCA        120
GCTGAGATCC GTGATCCATG GAAAAAAGCT CGTGTTTGGT TAGGTACTTT CGATTCCGCC        180
GAAGAAGCTG CTCGCGCTTA CGACTCCGCC GCTCGTAACC TCCGTGGTCC TAAAGCCAAA        240
ACTAATTTCC CCATCGATTC TTCTTCTCCT CCTCCTCCTA ATCTCCGATT TAATCAGATT        300
CGTAATCAAA ATCAAAACCA AGTCGATCCG TTTATGGACC ACCGGTTATT CACCGACCAT        360
CAACAACAGT TCCCGATTGT TAACCGGCCT ACTAGTAGCA GCATGAGCAG CACCGTTGAA        420
TCGTTTAGCG GACCCAGACC TACGACGATG AAACCGGCCA CGACGAAGAG ATATCCTAGA        480
ACTCCACCGG TTGTTCCGGA GGATTGTCAC AGCGATTGCG ATTCGTCGTC GTCTGTAATC        540
GACGACGACG ACGATATCGC ATCGTCTTCA CGGCGACGGA ATCCGCCGTT TCAATTCGAT        600
CTTAATTTTC CACCGTTGGA TTGTGTTGAC TTGTTCAATG GCGCTGATGA TCTTCACTGT        660
ACCGATCTAC GTCTCTAA                                                      678
 
Sequence: AT1G50640.1
submitter of sequence: public data
length: 226
description: amino acid sequence (TAIR 9.0)
AT1G50640.1
MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA         60
EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI RNQNQNQVDP FMDHRLFTDH        120
QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI        180
DDDDDIASSS RRRNPPFQFD LNFPPLDCVD LFNGADDLHC TDLRL*                       226
 
Sequence: AT1G50640.1
submitter of sequence: public data
length: 1286
description: cdna sequence (TAIR 9.0)
Sequence features and Clone alignments (BLAST):
Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu

Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
AT1G50640.1
GCTTTTTGTG TTGAAGAGAG AGTTTCCTAT CTTCTCCATT CCTCCCACCA TCTCCCTCAT         60
CTTCATCTTC CTCTCTCTTT CTCTCTTTCT CAACAATCTC TATTAGATCT TTCTCCATTA        120
CCATTACCTC TGGCTTTCTC TTAAATCCAC CATCATGAGG AGAGGAAGAG GCTCTTCCGC        180
CGTCGCCGGA CCTACCGTCG TTGCCGCCAT CAACGGATCT GTAAAAGAAA TCAGATTCAG        240
AGGCGTAAGG AAGAGACCTT GGGGACGATT CGCAGCTGAG ATCCGTGATC CATGGAAAAA        300
AGCTCGTGTT TGGTTAGGTA CTTTCGATTC CGCCGAAGAA GCTGCTCGCG CTTACGACTC        360
CGCCGCTCGT AACCTCCGTG GTCCTAAAGC CAAAACTAAT TTCCCCATCG ATTCTTCTTC        420
TCCTCCTCCT CCTAATCTCC GATTTAATCA GATTCGTAAT CAAAATCAAA ACCAAGTCGA        480
TCCGTTTATG GACCACCGGT TATTCACCGA CCATCAACAA CAGTTCCCGA TTGTTAACCG        540
GCCTACTAGT AGCAGCATGA GCAGCACCGT TGAATCGTTT AGCGGACCCA GACCTACGAC        600
GATGAAACCG GCCACGACGA AGAGATATCC TAGAACTCCA CCGGTTGTTC CGGAGGATTG        660
TCACAGCGAT TGCGATTCGT CGTCGTCTGT AATCGACGAC GACGACGATA TCGCATCGTC        720
TTCACGGCGA CGGAATCCGC CGTTTCAATT CGATCTTAAT TTTCCACCGT TGGATTGTGT        780
TGACTTGTTC AATGGCGCTG ATGATCTTCA CTGTACCGAT CTACGTCTCT AATGAATTGG        840
TAAAATCAAA ATCAAAATCA CAGATCCGTG ATCGGTTTGA TTTTAATCGA AAACACACAA        900
CAAAATCCTT TTTTTTTTTT TTTTTAAATT TTCTGTTTCG TTGATCTCAT ATAATTTTTA        960
CTATGCGGGA GAAATAGAAA GACAAAGAAA CGAAGAAGAA GAAGAAGATG GTGATGAGCT       1020
TGAGAGAGCT TGAGCTGGTT CTGTGTTTCT TCTGTGATGA TATTGTAAGA GTATTATTAT       1080
TTTACTATTA TTACTAAATC TTCAAAACCA AGAAGAAGAA GACCGAACAC GATGATCTGT       1140
TGTGTCTGTT TGTTTTACTG TAAGAAAAAC GCAGATCTGG GTTTCGTTTT TTTCTTGAGA       1200
TAGATCAAAC AACCCCCATC TTTGTAACAT ATACATTTGG AACACTCATG ATTCTAAATA       1260
AAAAATCTAG AATCTTTTTT TCATCT                                            1286
 
Sequence: AT1G50640.1
submitter of sequence: public data
length: 1286
description: genomic sequence (TAIR 9.0)
AT1G50640.1
GCTTTTTGTG TTGAAGAGAG AGTTTCCTAT CTTCTCCATT CCTCCCACCA TCTCCCTCAT         60
CTTCATCTTC CTCTCTCTTT CTCTCTTTCT CAACAATCTC TATTAGATCT TTCTCCATTA        120
CCATTACCTC TGGCTTTCTC TTAAATCCAC CATCATGAGG AGAGGAAGAG GCTCTTCCGC        180
CGTCGCCGGA CCTACCGTCG TTGCCGCCAT CAACGGATCT GTAAAAGAAA TCAGATTCAG        240
AGGCGTAAGG AAGAGACCTT GGGGACGATT CGCAGCTGAG ATCCGTGATC CATGGAAAAA        300
AGCTCGTGTT TGGTTAGGTA CTTTCGATTC CGCCGAAGAA GCTGCTCGCG CTTACGACTC        360
CGCCGCTCGT AACCTCCGTG GTCCTAAAGC CAAAACTAAT TTCCCCATCG ATTCTTCTTC        420
TCCTCCTCCT CCTAATCTCC GATTTAATCA GATTCGTAAT CAAAATCAAA ACCAAGTCGA        480
TCCGTTTATG GACCACCGGT TATTCACCGA CCATCAACAA CAGTTCCCGA TTGTTAACCG        540
GCCTACTAGT AGCAGCATGA GCAGCACCGT TGAATCGTTT AGCGGACCCA GACCTACGAC        600
GATGAAACCG GCCACGACGA AGAGATATCC TAGAACTCCA CCGGTTGTTC CGGAGGATTG        660
TCACAGCGAT TGCGATTCGT CGTCGTCTGT AATCGACGAC GACGACGATA TCGCATCGTC        720
TTCACGGCGA CGGAATCCGC CGTTTCAATT CGATCTTAAT TTTCCACCGT TGGATTGTGT        780
TGACTTGTTC AATGGCGCTG ATGATCTTCA CTGTACCGAT CTACGTCTCT AATGAATTGG        840
TAAAATCAAA ATCAAAATCA CAGATCCGTG ATCGGTTTGA TTTTAATCGA AAACACACAA        900
CAAAATCCTT TTTTTTTTTT TTTTTAAATT TTCTGTTTCG TTGATCTCAT ATAATTTTTA        960
CTATGCGGGA GAAATAGAAA GACAAAGAAA CGAAGAAGAA GAAGAAGATG GTGATGAGCT       1020
TGAGAGAGCT TGAGCTGGTT CTGTGTTTCT TCTGTGATGA TATTGTAAGA GTATTATTAT       1080
TTTACTATTA TTACTAAATC TTCAAAACCA AGAAGAAGAA GACCGAACAC GATGATCTGT       1140
TGTGTCTGTT TGTTTTACTG TAAGAAAAAC GCAGATCTGG GTTTCGTTTT TTTCTTGAGA       1200
TAGATCAAAC AACCCCCATC TTTGTAACAT ATACATTTGG AACACTCATG ATTCTAAATA       1260
AAAAATCTAG AATCTTTTTT TCATCT                                            1286

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