GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT1G50640.1

  Alternative name:ERF3
  Alternative name:ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3
  Alternative name:ATERF3
  Alternative name:AT1G50640

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

ATERF3/ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcriptional repressor (TAIR 7.0)

ATERF3/ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-3). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Identical to Ethylene-responsive transcription factor 3 (Ethylene-responsive element-binding factor 3) (EREBP-3) (AtERF3) (ERF3) [Arabidopsis Thaliana] (GB:O80339); similar to ERF7 (ETHYLINE RESPONSE FACTOR7), DNA binding / protein binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT3G20310.1); similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element-binding factor 3 homolog) (EREBP-5) (NtERF5) (GB:Q9SXS8); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) (MapMan)

Gene Ontology

GO term	Identifier	Type
negative regulation of ethylene mediated signaling pathway	GO:0010105	biological process
regulation of transcription, DNA-dependent	GO:0006355	biological process
protein binding	GO:0005515	molecular function
transcription repressor activity	GO:0016564	molecular function
DNA binding	GO:0003677	molecular function
transcription factor activity	GO:0003700	molecular function
nucleus	GO:0005634	cellular component

MapMan Annotation:
BIN 17.5.2:	hormone metabolism.ethylene.signal transduction
BIN 17.5:	hormone metabolism.ethylene
BIN 17:	hormone metabolism

Related with

MPIZp772K151Q	cDNA clone
MPIZp771I104Q	cDNA clone
REGIo476B102D	cDNA clone
MPIZp772E076Q	cDNA clone
MPIZp772H237Q	cDNA clone
MPIZp768L021Q	cDNA clone
261874_at	Affymetrix representative on ATH1-121501

External resources

Arabidopsis eFP browser

Sequence: AT1G50640.1

submitter of sequence:	public data
length:	226
description:	amino acid sequence (TAIR 7.0)

AT1G50640.1
MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA         60
EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI RNQNQNQVDP FMDHRLFTDH        120
QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI        180
DDDDDIASSS RRRNPPFQFD LNFPPLDCVD LFNGADDLHC TDLRL*                       226

Sequence: AT1G50640.1

submitter of sequence:	public data
length:	1286
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT1G50640.1
GCTTTTTGTG TTGAAGAGAG AGTTTCCTAT CTTCTCCATT CCTCCCACCA TCTCCCTCAT         60
CTTCATCTTC CTCTCTCTTT CTCTCTTTCT CAACAATCTC TATTAGATCT TTCTCCATTA        120
CCATTACCTC TGGCTTTCTC TTAAATCCAC CATCATGAGG AGAGGAAGAG GCTCTTCCGC        180
CGTCGCCGGA CCTACCGTCG TTGCCGCCAT CAACGGATCT GTAAAAGAAA TCAGATTCAG        240
AGGCGTAAGG AAGAGACCTT GGGGACGATT CGCAGCTGAG ATCCGTGATC CATGGAAAAA        300
AGCTCGTGTT TGGTTAGGTA CTTTCGATTC CGCCGAAGAA GCTGCTCGCG CTTACGACTC        360
CGCCGCTCGT AACCTCCGTG GTCCTAAAGC CAAAACTAAT TTCCCCATCG ATTCTTCTTC        420
TCCTCCTCCT CCTAATCTCC GATTTAATCA GATTCGTAAT CAAAATCAAA ACCAAGTCGA        480
TCCGTTTATG GACCACCGGT TATTCACCGA CCATCAACAA CAGTTCCCGA TTGTTAACCG        540
GCCTACTAGT AGCAGCATGA GCAGCACCGT TGAATCGTTT AGCGGACCCA GACCTACGAC        600
GATGAAACCG GCCACGACGA AGAGATATCC TAGAACTCCA CCGGTTGTTC CGGAGGATTG        660
TCACAGCGAT TGCGATTCGT CGTCGTCTGT AATCGACGAC GACGACGATA TCGCATCGTC        720
TTCACGGCGA CGGAATCCGC CGTTTCAATT CGATCTTAAT TTTCCACCGT TGGATTGTGT        780
TGACTTGTTC AATGGCGCTG ATGATCTTCA CTGTACCGAT CTACGTCTCT AATGAATTGG        840
TAAAATCAAA ATCAAAATCA CAGATCCGTG ATCGGTTTGA TTTTAATCGA AAACACACAA        900
CAAAATCCTT TTTTTTTTTT TTTTTAAATT TTCTGTTTCG TTGATCTCAT ATAATTTTTA        960
CTATGCGGGA GAAATAGAAA GACAAAGAAA CGAAGAAGAA GAAGAAGATG GTGATGAGCT       1020
TGAGAGAGCT TGAGCTGGTT CTGTGTTTCT TCTGTGATGA TATTGTAAGA GTATTATTAT       1080
TTTACTATTA TTACTAAATC TTCAAAACCA AGAAGAAGAA GACCGAACAC GATGATCTGT       1140
TGTGTCTGTT TGTTTTACTG TAAGAAAAAC GCAGATCTGG GTTTCGTTTT TTTCTTGAGA       1200
TAGATCAAAC AACCCCCATC TTTGTAACAT ATACATTTGG AACACTCATG ATTCTAAATA       1260
AAAAATCTAG AATCTTTTTT TCATCT                                            1286

	SNP	left flanking [allel] right flanking
	SNP260042	AACAACAGTT[C/C]CCGATTGTTA
	SNP260041	TTAGCGGACC[C/C]AGACCTACGA
	SNP310285	AGAGATATCC[T/T]AGAACTCCAC

Sequence: AT1G50640.1

submitter of sequence:	public data
length:	678
description:	coding sequence (TAIR 7.0)

AT1G50640.1
ATGAGGAGAG GAAGAGGCTC TTCCGCCGTC GCCGGACCTA CCGTCGTTGC CGCCATCAAC         60
GGATCTGTAA AAGAAATCAG ATTCAGAGGC GTAAGGAAGA GACCTTGGGG ACGATTCGCA        120
GCTGAGATCC GTGATCCATG GAAAAAAGCT CGTGTTTGGT TAGGTACTTT CGATTCCGCC        180
GAAGAAGCTG CTCGCGCTTA CGACTCCGCC GCTCGTAACC TCCGTGGTCC TAAAGCCAAA        240
ACTAATTTCC CCATCGATTC TTCTTCTCCT CCTCCTCCTA ATCTCCGATT TAATCAGATT        300
CGTAATCAAA ATCAAAACCA AGTCGATCCG TTTATGGACC ACCGGTTATT CACCGACCAT        360
CAACAACAGT TCCCGATTGT TAACCGGCCT ACTAGTAGCA GCATGAGCAG CACCGTTGAA        420
TCGTTTAGCG GACCCAGACC TACGACGATG AAACCGGCCA CGACGAAGAG ATATCCTAGA        480
ACTCCACCGG TTGTTCCGGA GGATTGTCAC AGCGATTGCG ATTCGTCGTC GTCTGTAATC        540
GACGACGACG ACGATATCGC ATCGTCTTCA CGGCGACGGA ATCCGCCGTT TCAATTCGAT        600
CTTAATTTTC CACCGTTGGA TTGTGTTGAC TTGTTCAATG GCGCTGATGA TCTTCACTGT        660
ACCGATCTAC GTCTCTAA                                                      678