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Gene: AT1G07540.1


  Alternative name:AT1G07540

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
TRFL2 (TRF-LIKE 2); DNA binding (TAIR 7.0)
TRFL2 (TRF-LIKE 2); DNA binding Arabidopsis thaliana telomere-binding protein, putative (At1g07540) similar to TRFL1 (TRF-LIKE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT3G46590.1); similar to telomere binding protein [Solanum lycopersicum] (GB:BAF36749.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) (MapMan)

Gene Ontology
GO termIdentifierType
DNA bindingGO:0003677molecular function
MapMan Annotation:
BIN  27.3.25: RNA.regulation of transcription.MYB domain transcription factor family
BIN  27.3: RNA.regulation of transcription
BIN  27: RNA

Related with
504C08 T-DNA Line
261061_at Affymetrix representative on ATH1-121501

Orthologues and co-orthologues identified by INPARANOID
LOC_Os03g16700.2 Oryza sativa japonica
LOC_Os03g16700.3 Oryza sativa japonica
LOC_Os03g16700.1 Oryza sativa japonica

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
MapCave
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
SLocX
iHOP (AT1G07540)
 
Sequence: AT1G07540.1
submitter of sequence: public data
length: 631
description: amino acid sequence (TAIR 7.0)
AT1G07540.1
MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS         60
SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN NNAERSFFVS EILQKSHEMQ        120
SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL        180
NFEAKLSRNV VGKDEKHIGS GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR        240
STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK        300
KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS        360
FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL VHGKKVRDDS KMLLQTGLSL        420
DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL        480
DSKPSAPNRG KTIYSRALIP VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV        540
QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR        600
VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL *                                       631
 
Sequence: AT1G07540.1
submitter of sequence: public data
length: 1893
description: cdna sequence (TAIR 7.0)
Sequence features and Clone alignments (BLAST):
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Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
AT1G07540.1
ATGGTGTTGC AAAAGAGGCC CGATTATGGA TTCAATGGCT ATGAGGTGCC TCACACACCT         60
CGAGCTGCCA GATCACCAAG AAAGAGTGCT TTCAAGAAGA AAAGCGAAAA CCATCAAATA        120
TCGTCTTTCG ATTTGTTGGC TGCAGTAGCT GGAAAACTGC TGCTTGAAGG TGGGAATTCT        180
TCTTCCTCAA GTAACAATAC CTCTGGTAAT AATGAAGATC AGTGTGCAGT TAAGAAAGAG        240
CCGCTTAACG GCGGCGATAT AATGGTGGAA GAAGAGACTA CAAATTCTGA TCATGATAAT        300
AATAATGCTG AACGGAGTTT CTTTGTCTCT GAGATTCTTC AAAAATCTCA TGAAATGCAA        360
AGCTTTAATA GATCTCCAAG TCCCCTTAAA GAGTTCCATT TTGGATCTTC TTCTGGTATA        420
ACTTCTGATT CCTCTGAGAA GTTTGAAACT CAAGAATTGG CGTATGATGA ATCCAAGATC        480
AATAATGGTG ATTGCTATAG GTCAGAGTCT AATGATAAGA AATCAATGCT TGGAGGGTTA        540
AATTTTGAAG CAAAGTTATC AAGGAATGTT GTAGGTAAGG ATGAGAAACA TATAGGTAGT        600
GGATTCAGGA AACCTATTCC CCAAAATCCT TCAACATGCT CCGATGATGT AGATTTACAC        660
GGTAAGGAAA ATGATGATGG CGAAAACTTC TCAGCCTGTT ACAGAACAAA ATCATTTAGG        720
TCAACTCTGC GTATTGGAGA TAGAAGAATA AGGAAAGTTT GGGCTTCCAA GTATTGTAAA        780
GTCCCTCCAA AGCTGAAAGA TACAACAGTA ACTAATTCAG ACTTGGACTT GAAGTCTGAT        840
TACTATAGCA AGAAACATTG TCTTAAAAGC TTAAGATCAG AGAGGAACTA TCCAATAAAG        900
AAAAGGAGAT ACTTTGATGG TTATACAGCA TCACAATCCG AGGAAACAAA TAAAAATGAA        960
GGCCAGTCTG GTTCACCTCG AAAGGCTTCA GCTTTTCTAT CATCCATAGC TTGTCAGAAG       1020
CAGCCTGCAG CATTCCAATC ACCAAGAGAT TCTAATAACG TGAAACTTGG AATCAAGTCA       1080
TTTAGAGTCC CTGAACTTTT CATTGAAATT CCAGAGACAG CTACTGTCGG TTCGCTAAAG       1140
AGGACAGTGT TGGAAGCTGT GACCTCGATA CTTGGAGGTG GATTACGCAT AGGTGTTCTG       1200
GTTCATGGGA AAAAGGTTAG AGACGACAGT AAAATGCTTC TACAGACTGG ACTCTCTCTA       1260
GACACTCTTT CAGACACTTT AGGGTTTTGT CTTGAGCCAA ATCCTCCACA ATCCACAAAA       1320
CCACTATCTC CTGAAGATTC TGACTTTGCA CGTCCCTGTA ATGTACCTCA CACTCTAACA       1380
AGGTGTCTCC CATCACCAGG GAAGCATGCT AAACCGAGTA ACTCTGTAGA AAGTGACCTT       1440
GACTCCAAAC CCTCTGCACC AAATAGGGGT AAAACCATCT ACTCGAGAGC CTTGATTCCT       1500
GTATCTCCTC TGCATGCTCA GGCGTTGACA GTAGTCCCAC CTCGGAAAAC CAAGCGATCT       1560
GAAGTGGCAC AGCGTAGGAT CCGTCGACCT TTTTCTGTTG CTGAAGTAGA GGCCCTTGTT       1620
CAAGCTGTGG AGAGACTTGG GACCGGAAGG TGGCGTGACG TAAAATTGCG AGCTTTTGAT       1680
AATGCTAAGC ACCGTACTTA CGTTGATTTG AAGGACAAAT GGAAGACGCT GGTGCACACA       1740
GCAAGAATAT CACCGCAACA AAGGAGAGGT GAGCCAGTTC CACAGGAGCT CTTAGACCGG       1800
GTACTAACGG CTCATGCCTA CTGGTCCCAG CAACAGGGGA AACACCAGTT ACTAGAGGGA       1860
CCCCAGCAGC TCGAGACCAG TCTTGGTCTA TAG                                    1893
	      
SNPleft flanking [allel] right flanking
SNP362252 ACAATACCTC[T/T]GGTAATAATG
SNP362251 GCTTAACGGC[G/G]GCGATATAAT
SNP362250 CTTAACGGCG[G/G]CGATATAATG
SNP362249 CGGCGGCGAT[A/A]TAATGGTGGA
SNP362248 AAGAGACTAC[A/A]AATTCTGATC
SNP362247 GATCATGATA[A/A]TAATAATGCT
SNP362246 TCATGATAAT[A/A]ATAATGCTGA
SNP362245 TAATGCTGAA[C/C]GGAGTTTCTT
SNP362244 GAGATTCTTC[A/A]AAAATCTCAT
SNP362243 AAAGCTTTAA[T/T]AGATCTCCAA
SNP362242 CTTTAATAGA[T/T]CTCCAAGTCC
SNP362241 TTTAATAGAT[C/C]TCCAAGTCCC
SNP115738 CCAAGTCCCC[T/T]TAAAGAGTTC
SNP115737 GTTCCATTTT[G/G]GATCTTCTTC
SNP115736 AAGATCAATA[A/A]TGGTGATTGC
SNP362240 CCCAAAATCC[T/T]TCAACATGCT
SNP115735 TGAAAGATAC[A/A]ACAGTAACTA
SNP115734 ATGAAGGCCA[G/G]TCTGGTTCAC
SNP115733 TCTATCATCC[A/A]TAGCTTGTCA
SNP362239 CATAGCTTGT[C/C]AGAAGCAGCC
SNP115732 ATAGCTTGTC[A/A]GAAGCAGCCT
SNP115731 ATTCCAATCA[C/C]CAAGAGATTC
SNP115730 CATTTAGAGT[C/C]CCTGAACTTT
SNP115729 TCGGTTCGCT[A/A]AAGAGGACAG
SNP115728 AGAGGACAGT[G/G]TTGGAAGCTG
SNP115727 AAGCTGTGAC[C/C]TCGATACTTG
SNP362238 CTGTGACCTC[G/G]ATACTTGGAG
SNP115726 TAGGTGTTCT[G/G]GTTCATGGGA
SNP115725 AAAAGGTTAG[A/A]GACGACAGTA
SNP115724 CTTCTACAGA[C/C]TGGACTCTCT
SNP115723 CTCTTTCAGA[C/C]ACTTTAGGGT
SNP303490 TCCACAAAAC[C/C]ACTATCTCCT
SNP303489 TGCACGTCCC[T/T]GTAATGTACC
SNP115722 CTCACACTCT[A/A]ACAAGGTGTC
SNP115721 CTCCCATCAC[C/C]AGGGAAGCAT
SNP115720 GCACCAAATA[G/G]GGGTAAAACC
SNP115719 CCATCTACTC[G/G]AGAGCCTTGA
SNP115718 TATCTCCTCT[G/G]CATGCTCAGG
SNP115717 TGCATGCTCA[G/G]GCGTTGACAG
SNP115716 ATGCTCAGGC[G/G]TTGACAGTAG
SNP115715 CTAAGCACCG[T/T]ACTTACGTTG
SNP115714 CACACAGCAA[G/G]AATATCACCG
SNP115713 AGACCGGGTA[C/C]TAACGGCTCA
SNP115712 GGGTACTAAC[G/G]GCTCATGCCT
SNP115711 CTCATGCCTA[C/C]TGGTCCCAGC
SNP115710 GACCAGTCTT[G/G]GTCTATA...
 
Sequence: AT1G07540.1
submitter of sequence: public data
length: 2616
description: genomic sequence (TAIR 7.0)
AT1G07540.1
ATGGTGTTGC AAAAGAGGCC CGATTATGGA TTCAATGGCT ATGAGGTGCC TCACACACCT         60
CGAGCTGCCA GATCACCAAG AGTAAATACA ATTCTTAACT TTTTTGTGTG TTTCTTATCA        120
GTTTTATATA TGTTCTAATG TTCCCTTCTG ATATATATGT TTGTGTTTTG TGTTTTGCTA        180
GAAGAGTGCT TTCAAGAAGA AAAGCGAAAA CCATCAAATA TCGTCTTTCG ATTTGTTGGC        240
TGCAGTAGCT GGAAAACTGC TGCTTGAAGG TGGGAATTCT TCTTCCTCAA GTAACAATAC        300
CTCTGGTAAT AATGAAGATC AGTGTGCAGT TAAGAAAGAG CCGCTTAACG GCGGCGATAT        360
AATGGTGGAA GAAGAGACTA CAAATTCTGA TCATGATAAT AATAATGCTG AACGGAGTTT        420
CTTTGTCTCT GAGATTCTTC AAAAATCTCA TGAAATGCAA AGCTTTAATA GATCTCCAAG        480
TCCCCTTAAA GAGTTCCATT TTGGATCTTC TTCTGGTATA ACTTCTGATT CCTCTGAGAA        540
GTTTGAAACT CAAGAATTGG CGTATGATGA ATCCAAGATC AATAATGGTG ATTGCTATAG        600
GTCAGAGTCT AATGATAAGA AATCAATGCT TGGAGGGTTA AATTTTGAAG CAAAGTTATC        660
AAGGAATGTT GTAGGTAAGG ATGAGAAACA TATAGGTAGT GGATTCAGGA AACCTATTCC        720
CCAAAATCCT TCAACATGCT CCGATGATGT AGATTTACAC GGTAAGGAAA ATGATGATGG        780
CGAAAACTTC TCAGCCTGTT ACAGAACAAA ATCATTTAGG TCAACTCTGC GTATTGGAGA        840
TAGAAGAATA AGGAAAGTTT GGGCTTCCAA GTATTGTAAA GTCCCTCCAA AGCTGAAAGA        900
TACAACAGTA ACTAATTCAG GTGAACATTA TGGACCATTT GTGAGCAAGT CATATGTACT        960
TTTCAAGATG TTATGGTTTA TTTATGTGTC TTTGTCTGAA AATGTTTTAG ACTTGGACTT       1020
GAAGTCTGAT TACTATAGCA AGAAACATTG TCTTAAAAGC TTAAGATCAG AGAGGAACTA       1080
TCCAATAAAG AAAAGGAGAT ACTTTGATGG TTATACAGCA TCACAATCCG AGGAAACAAA       1140
TAAAAATGAA GGCCAGTCTG GTTCACCTCG AAAGGGTATA TTATCGGAAG CTAGTCATTT       1200
AACGTCAAAA ATCACTTTAC GATGATATAG TGATTAACTT TGAACTTTGT TTTTGGCAGC       1260
TTCAGCTTTT CTATCATCCA TAGCTTGTCA GAAGCAGCCT GCAGCATTCC AATCACCAAG       1320
AGATTCTAAT AACGGTATCT ATTTCTATTG AGGTTTTTTG TTATTTTTAC CAATCAGATT       1380
TTTGTATTAA TTCTGTTCAT TTTTTCTTGT TGTGCTTAGT GAAACTTGGA ATCAAGTCAT       1440
TTAGAGTCCC TGAACTTTTC ATTGAAATTC CAGAGACAGC TACTGTCGGT TCGCTAAAGG       1500
TTAGGATTTT TCGGCTTATA ATTTTCTGGA AGGATCTCCT TCATGTTTAT GGATAATGAT       1560
TGATGAAACT TTACTTCTTC TCGCTAGAGG ACAGTGTTGG AAGCTGTGAC CTCGATACTT       1620
GGAGGTGGAT TACGCATAGG TGTTCTGGTT CATGGGAAAA AGGTTAGAGA CGACAGTAAA       1680
ATGCTTCTAC AGACTGGACT CTCTCTAGAC ACTCTTTCAG ACACTTTAGG GTTTTGTCTT       1740
GAGCCAAATC CTCCACAATC CACAAAACCA CTATCTCCTG AAGATTCTGA CTTTGCACGT       1800
CCCTGTAATG TACCTCACAC TCTAACAAGG TCAGTCTCTA TCCAGAGGTC AATGTATGCT       1860
GCTTCTTTCT TTAGTGTAGA GAAGAACTCT GTTTCTGATG TTTTCCAAAA CTTTTTTGAC       1920
ATCATTAGGT GTCTCCCATC ACCAGGGAAG CATGCTAAAC CGAGTAACTC TGTAGAAAGT       1980
GACCTTGACT CCAAACCCTC TGCACCAAAT AGGGGTAAAA CCATCTACTC GAGAGCCTTG       2040
ATTCCTGTAT CTCCTCTGCA TGCTCAGGCG TTGACAGTAG TCCCACCTCG GAAAACCAAG       2100
CGATCTGAAG TGGCACAGCG TAGGATCCGT CGACCTTTTT CTGTTGCTGA AGTAGAGGCC       2160
CTTGTTCAAG CTGTGGAGAG ACTTGGGACC GGAAGGTAAC TAAATTTTTT ATGTTCACCA       2220
AAGTATAAGA CTTAATTTCC ATCAATAATT GGTTCAAGAT AGTTCTAAGA TTGTTGTGCA       2280
TATCTATCTG CAGGTGGCGT GACGTAAAAT TGCGAGCTTT TGATAATGCT AAGCACCGTA       2340
CTTACGTTGA TTTGAAGGTA AAATAAAACT CTCTCCTTAC AGTGAATGAG GTCTATGTTT       2400
CTTGTGCAAG AAGTAACTAA TTTTGGGATT GATTAGGACA AATGGAAGAC GCTGGTGCAC       2460
ACAGCAAGAA TATCACCGCA ACAAAGGAGA GGTGAGCCAG TTCCACAGGA GCTCTTAGAC       2520
CGGGTACTAA CGGCTCATGC CTACTGGTCC CAGCAACAGG GGAAACACCA GTTACTAGAG       2580
GGACCCCAGC AGCTCGAGAC CAGTCTTGGT CTATAG                                 2616
 
Sequence: AT1G07540.1
submitter of sequence: public data
length: 1893
description: coding sequence (TAIR 7.0)
AT1G07540.1
ATGGTGTTGC AAAAGAGGCC CGATTATGGA TTCAATGGCT ATGAGGTGCC TCACACACCT         60
CGAGCTGCCA GATCACCAAG AAAGAGTGCT TTCAAGAAGA AAAGCGAAAA CCATCAAATA        120
TCGTCTTTCG ATTTGTTGGC TGCAGTAGCT GGAAAACTGC TGCTTGAAGG TGGGAATTCT        180
TCTTCCTCAA GTAACAATAC CTCTGGTAAT AATGAAGATC AGTGTGCAGT TAAGAAAGAG        240
CCGCTTAACG GCGGCGATAT AATGGTGGAA GAAGAGACTA CAAATTCTGA TCATGATAAT        300
AATAATGCTG AACGGAGTTT CTTTGTCTCT GAGATTCTTC AAAAATCTCA TGAAATGCAA        360
AGCTTTAATA GATCTCCAAG TCCCCTTAAA GAGTTCCATT TTGGATCTTC TTCTGGTATA        420
ACTTCTGATT CCTCTGAGAA GTTTGAAACT CAAGAATTGG CGTATGATGA ATCCAAGATC        480
AATAATGGTG ATTGCTATAG GTCAGAGTCT AATGATAAGA AATCAATGCT TGGAGGGTTA        540
AATTTTGAAG CAAAGTTATC AAGGAATGTT GTAGGTAAGG ATGAGAAACA TATAGGTAGT        600
GGATTCAGGA AACCTATTCC CCAAAATCCT TCAACATGCT CCGATGATGT AGATTTACAC        660
GGTAAGGAAA ATGATGATGG CGAAAACTTC TCAGCCTGTT ACAGAACAAA ATCATTTAGG        720
TCAACTCTGC GTATTGGAGA TAGAAGAATA AGGAAAGTTT GGGCTTCCAA GTATTGTAAA        780
GTCCCTCCAA AGCTGAAAGA TACAACAGTA ACTAATTCAG ACTTGGACTT GAAGTCTGAT        840
TACTATAGCA AGAAACATTG TCTTAAAAGC TTAAGATCAG AGAGGAACTA TCCAATAAAG        900
AAAAGGAGAT ACTTTGATGG TTATACAGCA TCACAATCCG AGGAAACAAA TAAAAATGAA        960
GGCCAGTCTG GTTCACCTCG AAAGGCTTCA GCTTTTCTAT CATCCATAGC TTGTCAGAAG       1020
CAGCCTGCAG CATTCCAATC ACCAAGAGAT TCTAATAACG TGAAACTTGG AATCAAGTCA       1080
TTTAGAGTCC CTGAACTTTT CATTGAAATT CCAGAGACAG CTACTGTCGG TTCGCTAAAG       1140
AGGACAGTGT TGGAAGCTGT GACCTCGATA CTTGGAGGTG GATTACGCAT AGGTGTTCTG       1200
GTTCATGGGA AAAAGGTTAG AGACGACAGT AAAATGCTTC TACAGACTGG ACTCTCTCTA       1260
GACACTCTTT CAGACACTTT AGGGTTTTGT CTTGAGCCAA ATCCTCCACA ATCCACAAAA       1320
CCACTATCTC CTGAAGATTC TGACTTTGCA CGTCCCTGTA ATGTACCTCA CACTCTAACA       1380
AGGTGTCTCC CATCACCAGG GAAGCATGCT AAACCGAGTA ACTCTGTAGA AAGTGACCTT       1440
GACTCCAAAC CCTCTGCACC AAATAGGGGT AAAACCATCT ACTCGAGAGC CTTGATTCCT       1500
GTATCTCCTC TGCATGCTCA GGCGTTGACA GTAGTCCCAC CTCGGAAAAC CAAGCGATCT       1560
GAAGTGGCAC AGCGTAGGAT CCGTCGACCT TTTTCTGTTG CTGAAGTAGA GGCCCTTGTT       1620
CAAGCTGTGG AGAGACTTGG GACCGGAAGG TGGCGTGACG TAAAATTGCG AGCTTTTGAT       1680
AATGCTAAGC ACCGTACTTA CGTTGATTTG AAGGACAAAT GGAAGACGCT GGTGCACACA       1740
GCAAGAATAT CACCGCAACA AAGGAGAGGT GAGCCAGTTC CACAGGAGCT CTTAGACCGG       1800
GTACTAACGG CTCATGCCTA CTGGTCCCAG CAACAGGGGA AACACCAGTT ACTAGAGGGA       1860
CCCCAGCAGC TCGAGACCAG TCTTGGTCTA TAG                                    1893

Gene: AT1G07540.1


  Alternative name:TRFL2
  Alternative name:AT1G07540
  Alternative name:TRF-LIKE 2

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
TRFL2 (TRF-LIKE 2); DNA binding (TAIR 9.0)

Gene Ontology
GO termIdentifierType
DNA bindingGO:0003677molecular function

Related with
504C08 T-DNA Line
261061_at Affymetrix representative on ATH1-121501
BQ506553 cDNA clone

Orthologues and co-orthologues identified by INPARANOID
LOC_Os03g16700.4 Oryza sativa japonica
LOC_Os03g16700.2 Oryza sativa japonica
LOC_Os03g16700.3 Oryza sativa japonica
LOC_Os03g16700.1 Oryza sativa japonica
POPTR_0001s24840.1 Populus trichocarpa

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
MapCave
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
SLocX
iHOP (TRFL2)
iHOP (AT1G07540)
 
Sequence: AT1G07540.1
submitter of sequence: public data
length: 1893
description: coding sequence (TAIR 9.0)
AT1G07540.1
ATGGTGTTGC AAAAGAGGCC CGATTATGGA TTCAATGGCT ATGAGGTGCC TCACACACCT         60
CGAGCTGCCA GATCACCAAG AAAGAGTGCT TTCAAGAAGA AAAGCGAAAA CCATCAAATA        120
TCGTCTTTCG ATTTGTTGGC TGCAGTAGCT GGAAAACTGC TGCTTGAAGG TGGGAATTCT        180
TCTTCCTCAA GTAACAATAC CTCTGGTAAT AATGAAGATC AGTGTGCAGT TAAGAAAGAG        240
CCGCTTAACG GCGGCGATAT AATGGTGGAA GAAGAGACTA CAAATTCTGA TCATGATAAT        300
AATAATGCTG AACGGAGTTT CTTTGTCTCT GAGATTCTTC AAAAATCTCA TGAAATGCAA        360
AGCTTTAATA GATCTCCAAG TCCCCTTAAA GAGTTCCATT TTGGATCTTC TTCTGGTATA        420
ACTTCTGATT CCTCTGAGAA GTTTGAAACT CAAGAATTGG CGTATGATGA ATCCAAGATC        480
AATAATGGTG ATTGCTATAG GTCAGAGTCT AATGATAAGA AATCAATGCT TGGAGGGTTA        540
AATTTTGAAG CAAAGTTATC AAGGAATGTT GTAGGTAAGG ATGAGAAACA TATAGGTAGT        600
GGATTCAGGA AACCTATTCC CCAAAATCCT TCAACATGCT CCGATGATGT AGATTTACAC        660
GGTAAGGAAA ATGATGATGG CGAAAACTTC TCAGCCTGTT ACAGAACAAA ATCATTTAGG        720
TCAACTCTGC GTATTGGAGA TAGAAGAATA AGGAAAGTTT GGGCTTCCAA GTATTGTAAA        780
GTCCCTCCAA AGCTGAAAGA TACAACAGTA ACTAATTCAG ACTTGGACTT GAAGTCTGAT        840
TACTATAGCA AGAAACATTG TCTTAAAAGC TTAAGATCAG AGAGGAACTA TCCAATAAAG        900
AAAAGGAGAT ACTTTGATGG TTATACAGCA TCACAATCCG AGGAAACAAA TAAAAATGAA        960
GGCCAGTCTG GTTCACCTCG AAAGGCTTCA GCTTTTCTAT CATCCATAGC TTGTCAGAAG       1020
CAGCCTGCAG CATTCCAATC ACCAAGAGAT TCTAATAACG TGAAACTTGG AATCAAGTCA       1080
TTTAGAGTCC CTGAACTTTT CATTGAAATT CCAGAGACAG CTACTGTCGG TTCGCTAAAG       1140
AGGACAGTGT TGGAAGCTGT GACCTCGATA CTTGGAGGTG GATTACGCAT AGGTGTTCTG       1200
GTTCATGGGA AAAAGGTTAG AGACGACAGT AAAATGCTTC TACAGACTGG ACTCTCTCTA       1260
GACACTCTTT CAGACACTTT AGGGTTTTGT CTTGAGCCAA ATCCTCCACA ATCCACAAAA       1320
CCACTATCTC CTGAAGATTC TGACTTTGCA CGTCCCTGTA ATGTACCTCA CACTCTAACA       1380
AGGTGTCTCC CATCACCAGG GAAGCATGCT AAACCGAGTA ACTCTGTAGA AAGTGACCTT       1440
GACTCCAAAC CCTCTGCACC AAATAGGGGT AAAACCATCT ACTCGAGAGC CTTGATTCCT       1500
GTATCTCCTC TGCATGCTCA GGCGTTGACA GTAGTCCCAC CTCGGAAAAC CAAGCGATCT       1560
GAAGTGGCAC AGCGTAGGAT CCGTCGACCT TTTTCTGTTG CTGAAGTAGA GGCCCTTGTT       1620
CAAGCTGTGG AGAGACTTGG GACCGGAAGG TGGCGTGACG TAAAATTGCG AGCTTTTGAT       1680
AATGCTAAGC ACCGTACTTA CGTTGATTTG AAGGACAAAT GGAAGACGCT GGTGCACACA       1740
GCAAGAATAT CACCGCAACA AAGGAGAGGT GAGCCAGTTC CACAGGAGCT CTTAGACCGG       1800
GTACTAACGG CTCATGCCTA CTGGTCCCAG CAACAGGGGA AACACCAGTT ACTAGAGGGA       1860
CCCCAGCAGC TCGAGACCAG TCTTGGTCTA TAG                                    1893
 
Sequence: AT1G07540.1
submitter of sequence: public data
length: 631
description: amino acid sequence (TAIR 9.0)
AT1G07540.1
MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS         60
SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN NNAERSFFVS EILQKSHEMQ        120
SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL        180
NFEAKLSRNV VGKDEKHIGS GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR        240
STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK        300
KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS        360
FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL VHGKKVRDDS KMLLQTGLSL        420
DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL        480
DSKPSAPNRG KTIYSRALIP VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV        540
QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR        600
VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL *                                       631
 
Sequence: AT1G07540.1
submitter of sequence: public data
length: 1893
description: cdna sequence (TAIR 9.0)
Sequence features and Clone alignments (BLAST):
Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu

Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
AT1G07540.1
ATGGTGTTGC AAAAGAGGCC CGATTATGGA TTCAATGGCT ATGAGGTGCC TCACACACCT         60
CGAGCTGCCA GATCACCAAG AAAGAGTGCT TTCAAGAAGA AAAGCGAAAA CCATCAAATA        120
TCGTCTTTCG ATTTGTTGGC TGCAGTAGCT GGAAAACTGC TGCTTGAAGG TGGGAATTCT        180
TCTTCCTCAA GTAACAATAC CTCTGGTAAT AATGAAGATC AGTGTGCAGT TAAGAAAGAG        240
CCGCTTAACG GCGGCGATAT AATGGTGGAA GAAGAGACTA CAAATTCTGA TCATGATAAT        300
AATAATGCTG AACGGAGTTT CTTTGTCTCT GAGATTCTTC AAAAATCTCA TGAAATGCAA        360
AGCTTTAATA GATCTCCAAG TCCCCTTAAA GAGTTCCATT TTGGATCTTC TTCTGGTATA        420
ACTTCTGATT CCTCTGAGAA GTTTGAAACT CAAGAATTGG CGTATGATGA ATCCAAGATC        480
AATAATGGTG ATTGCTATAG GTCAGAGTCT AATGATAAGA AATCAATGCT TGGAGGGTTA        540
AATTTTGAAG CAAAGTTATC AAGGAATGTT GTAGGTAAGG ATGAGAAACA TATAGGTAGT        600
GGATTCAGGA AACCTATTCC CCAAAATCCT TCAACATGCT CCGATGATGT AGATTTACAC        660
GGTAAGGAAA ATGATGATGG CGAAAACTTC TCAGCCTGTT ACAGAACAAA ATCATTTAGG        720
TCAACTCTGC GTATTGGAGA TAGAAGAATA AGGAAAGTTT GGGCTTCCAA GTATTGTAAA        780
GTCCCTCCAA AGCTGAAAGA TACAACAGTA ACTAATTCAG ACTTGGACTT GAAGTCTGAT        840
TACTATAGCA AGAAACATTG TCTTAAAAGC TTAAGATCAG AGAGGAACTA TCCAATAAAG        900
AAAAGGAGAT ACTTTGATGG TTATACAGCA TCACAATCCG AGGAAACAAA TAAAAATGAA        960
GGCCAGTCTG GTTCACCTCG AAAGGCTTCA GCTTTTCTAT CATCCATAGC TTGTCAGAAG       1020
CAGCCTGCAG CATTCCAATC ACCAAGAGAT TCTAATAACG TGAAACTTGG AATCAAGTCA       1080
TTTAGAGTCC CTGAACTTTT CATTGAAATT CCAGAGACAG CTACTGTCGG TTCGCTAAAG       1140
AGGACAGTGT TGGAAGCTGT GACCTCGATA CTTGGAGGTG GATTACGCAT AGGTGTTCTG       1200
GTTCATGGGA AAAAGGTTAG AGACGACAGT AAAATGCTTC TACAGACTGG ACTCTCTCTA       1260
GACACTCTTT CAGACACTTT AGGGTTTTGT CTTGAGCCAA ATCCTCCACA ATCCACAAAA       1320
CCACTATCTC CTGAAGATTC TGACTTTGCA CGTCCCTGTA ATGTACCTCA CACTCTAACA       1380
AGGTGTCTCC CATCACCAGG GAAGCATGCT AAACCGAGTA ACTCTGTAGA AAGTGACCTT       1440
GACTCCAAAC CCTCTGCACC AAATAGGGGT AAAACCATCT ACTCGAGAGC CTTGATTCCT       1500
GTATCTCCTC TGCATGCTCA GGCGTTGACA GTAGTCCCAC CTCGGAAAAC CAAGCGATCT       1560
GAAGTGGCAC AGCGTAGGAT CCGTCGACCT TTTTCTGTTG CTGAAGTAGA GGCCCTTGTT       1620
CAAGCTGTGG AGAGACTTGG GACCGGAAGG TGGCGTGACG TAAAATTGCG AGCTTTTGAT       1680
AATGCTAAGC ACCGTACTTA CGTTGATTTG AAGGACAAAT GGAAGACGCT GGTGCACACA       1740
GCAAGAATAT CACCGCAACA AAGGAGAGGT GAGCCAGTTC CACAGGAGCT CTTAGACCGG       1800
GTACTAACGG CTCATGCCTA CTGGTCCCAG CAACAGGGGA AACACCAGTT ACTAGAGGGA       1860
CCCCAGCAGC TCGAGACCAG TCTTGGTCTA TAG                                    1893
 
Sequence: AT1G07540.1
submitter of sequence: public data
length: 2616
description: genomic sequence (TAIR 9.0)
AT1G07540.1
ATGGTGTTGC AAAAGAGGCC CGATTATGGA TTCAATGGCT ATGAGGTGCC TCACACACCT         60
CGAGCTGCCA GATCACCAAG AGTAAATACA ATTCTTAACT TTTTTGTGTG TTTCTTATCA        120
GTTTTATATA TGTTCTAATG TTCCCTTCTG ATATATATGT TTGTGTTTTG TGTTTTGCTA        180
GAAGAGTGCT TTCAAGAAGA AAAGCGAAAA CCATCAAATA TCGTCTTTCG ATTTGTTGGC        240
TGCAGTAGCT GGAAAACTGC TGCTTGAAGG TGGGAATTCT TCTTCCTCAA GTAACAATAC        300
CTCTGGTAAT AATGAAGATC AGTGTGCAGT TAAGAAAGAG CCGCTTAACG GCGGCGATAT        360
AATGGTGGAA GAAGAGACTA CAAATTCTGA TCATGATAAT AATAATGCTG AACGGAGTTT        420
CTTTGTCTCT GAGATTCTTC AAAAATCTCA TGAAATGCAA AGCTTTAATA GATCTCCAAG        480
TCCCCTTAAA GAGTTCCATT TTGGATCTTC TTCTGGTATA ACTTCTGATT CCTCTGAGAA        540
GTTTGAAACT CAAGAATTGG CGTATGATGA ATCCAAGATC AATAATGGTG ATTGCTATAG        600
GTCAGAGTCT AATGATAAGA AATCAATGCT TGGAGGGTTA AATTTTGAAG CAAAGTTATC        660
AAGGAATGTT GTAGGTAAGG ATGAGAAACA TATAGGTAGT GGATTCAGGA AACCTATTCC        720
CCAAAATCCT TCAACATGCT CCGATGATGT AGATTTACAC GGTAAGGAAA ATGATGATGG        780
CGAAAACTTC TCAGCCTGTT ACAGAACAAA ATCATTTAGG TCAACTCTGC GTATTGGAGA        840
TAGAAGAATA AGGAAAGTTT GGGCTTCCAA GTATTGTAAA GTCCCTCCAA AGCTGAAAGA        900
TACAACAGTA ACTAATTCAG GTGAACATTA TGGACCATTT GTGAGCAAGT CATATGTACT        960
TTTCAAGATG TTATGGTTTA TTTATGTGTC TTTGTCTGAA AATGTTTTAG ACTTGGACTT       1020
GAAGTCTGAT TACTATAGCA AGAAACATTG TCTTAAAAGC TTAAGATCAG AGAGGAACTA       1080
TCCAATAAAG AAAAGGAGAT ACTTTGATGG TTATACAGCA TCACAATCCG AGGAAACAAA       1140
TAAAAATGAA GGCCAGTCTG GTTCACCTCG AAAGGGTATA TTATCGGAAG CTAGTCATTT       1200
AACGTCAAAA ATCACTTTAC GATGATATAG TGATTAACTT TGAACTTTGT TTTTGGCAGC       1260
TTCAGCTTTT CTATCATCCA TAGCTTGTCA GAAGCAGCCT GCAGCATTCC AATCACCAAG       1320
AGATTCTAAT AACGGTATCT ATTTCTATTG AGGTTTTTTG TTATTTTTAC CAATCAGATT       1380
TTTGTATTAA TTCTGTTCAT TTTTTCTTGT TGTGCTTAGT GAAACTTGGA ATCAAGTCAT       1440
TTAGAGTCCC TGAACTTTTC ATTGAAATTC CAGAGACAGC TACTGTCGGT TCGCTAAAGG       1500
TTAGGATTTT TCGGCTTATA ATTTTCTGGA AGGATCTCCT TCATGTTTAT GGATAATGAT       1560
TGATGAAACT TTACTTCTTC TCGCTAGAGG ACAGTGTTGG AAGCTGTGAC CTCGATACTT       1620
GGAGGTGGAT TACGCATAGG TGTTCTGGTT CATGGGAAAA AGGTTAGAGA CGACAGTAAA       1680
ATGCTTCTAC AGACTGGACT CTCTCTAGAC ACTCTTTCAG ACACTTTAGG GTTTTGTCTT       1740
GAGCCAAATC CTCCACAATC CACAAAACCA CTATCTCCTG AAGATTCTGA CTTTGCACGT       1800
CCCTGTAATG TACCTCACAC TCTAACAAGG TCAGTCTCTA TCCAGAGGTC AATGTATGCT       1860
GCTTCTTTCT TTAGTGTAGA GAAGAACTCT GTTTCTGATG TTTTCCAAAA CTTTTTTGAC       1920
ATCATTAGGT GTCTCCCATC ACCAGGGAAG CATGCTAAAC CGAGTAACTC TGTAGAAAGT       1980
GACCTTGACT CCAAACCCTC TGCACCAAAT AGGGGTAAAA CCATCTACTC GAGAGCCTTG       2040
ATTCCTGTAT CTCCTCTGCA TGCTCAGGCG TTGACAGTAG TCCCACCTCG GAAAACCAAG       2100
CGATCTGAAG TGGCACAGCG TAGGATCCGT CGACCTTTTT CTGTTGCTGA AGTAGAGGCC       2160
CTTGTTCAAG CTGTGGAGAG ACTTGGGACC GGAAGGTAAC TAAATTTTTT ATGTTCACCA       2220
AAGTATAAGA CTTAATTTCC ATCAATAATT GGTTCAAGAT AGTTCTAAGA TTGTTGTGCA       2280
TATCTATCTG CAGGTGGCGT GACGTAAAAT TGCGAGCTTT TGATAATGCT AAGCACCGTA       2340
CTTACGTTGA TTTGAAGGTA AAATAAAACT CTCTCCTTAC AGTGAATGAG GTCTATGTTT       2400
CTTGTGCAAG AAGTAACTAA TTTTGGGATT GATTAGGACA AATGGAAGAC GCTGGTGCAC       2460
ACAGCAAGAA TATCACCGCA ACAAAGGAGA GGTGAGCCAG TTCCACAGGA GCTCTTAGAC       2520
CGGGTACTAA CGGCTCATGC CTACTGGTCC CAGCAACAGG GGAAACACCA GTTACTAGAG       2580
GGACCCCAGC AGCTCGAGAC CAGTCTTGGT CTATAG                                 2616

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