GABI Primary Database ( GabiPD ) - Genomanalyse im biologischen System Pflanze

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Gene: AT1G07540.1

Alternative name:AT1G07540

Genotype (Genotype)

	species:	Arabidopsis thaliana
	type:	wildtype
	common name:	thale cress
	cultivar:	Columbia

Gene function:

TRFL2 (TRF-LIKE 2); DNA binding (TAIR 7.0)

TRFL2 (TRF-LIKE 2); DNA binding Arabidopsis thaliana telomere-binding protein, putative (At1g07540) similar to TRFL1 (TRF-LIKE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT3G46590.1); similar to telomere binding protein [Solanum lycopersicum] (GB:BAF36749.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) (MapMan)

Gene Ontology

GO term	Identifier	Type
DNA binding	GO:0003677	molecular function

MapMan Annotation:
BIN 27.3.25:	RNA.regulation of transcription.MYB domain transcription factor family
BIN 27.3:	RNA.regulation of transcription
BIN 27:	RNA

Related with

504C08	T-DNA Line
261061_at	Affymetrix representative on ATH1-121501

Orthologues and co-orthologues identified by INPARANOID

LOC_Os03g16700.2	Oryza sativa japonica
LOC_Os03g16700.3	Oryza sativa japonica
LOC_Os03g16700.1	Oryza sativa japonica

External resources

Arabidopsis eFP browser

Sequence: AT1G07540.1

submitter of sequence:	public data
length:	631
description:	amino acid sequence (TAIR 7.0)

AT1G07540.1
MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS         60
SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN NNAERSFFVS EILQKSHEMQ        120
SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL        180
NFEAKLSRNV VGKDEKHIGS GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR        240
STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK        300
KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS        360
FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL VHGKKVRDDS KMLLQTGLSL        420
DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL        480
DSKPSAPNRG KTIYSRALIP VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV        540
QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR        600
VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL *                                       631

Sequence: AT1G07540.1

submitter of sequence:	public data
length:	1893
description:	cdna sequence (TAIR 7.0)

Sequence features and Clone alignments (BLAST):

	X

Gene structure	UTR	start codon	stop codon	exon-exon border
Clone alignments	forward	reverse	start	stop
Protein domains	domain

Click on sequence features to obtain additional information.

AT1G07540.1
ATGGTGTTGC AAAAGAGGCC CGATTATGGA TTCAATGGCT ATGAGGTGCC TCACACACCT         60
CGAGCTGCCA GATCACCAAG AAAGAGTGCT TTCAAGAAGA AAAGCGAAAA CCATCAAATA        120
TCGTCTTTCG ATTTGTTGGC TGCAGTAGCT GGAAAACTGC TGCTTGAAGG TGGGAATTCT        180
TCTTCCTCAA GTAACAATAC CTCTGGTAAT AATGAAGATC AGTGTGCAGT TAAGAAAGAG        240
CCGCTTAACG GCGGCGATAT AATGGTGGAA GAAGAGACTA CAAATTCTGA TCATGATAAT        300
AATAATGCTG AACGGAGTTT CTTTGTCTCT GAGATTCTTC AAAAATCTCA TGAAATGCAA        360
AGCTTTAATA GATCTCCAAG TCCCCTTAAA GAGTTCCATT TTGGATCTTC TTCTGGTATA        420
ACTTCTGATT CCTCTGAGAA GTTTGAAACT CAAGAATTGG CGTATGATGA ATCCAAGATC        480
AATAATGGTG ATTGCTATAG GTCAGAGTCT AATGATAAGA AATCAATGCT TGGAGGGTTA        540
AATTTTGAAG CAAAGTTATC AAGGAATGTT GTAGGTAAGG ATGAGAAACA TATAGGTAGT        600
GGATTCAGGA AACCTATTCC CCAAAATCCT TCAACATGCT CCGATGATGT AGATTTACAC        660
GGTAAGGAAA ATGATGATGG CGAAAACTTC TCAGCCTGTT ACAGAACAAA ATCATTTAGG        720
TCAACTCTGC GTATTGGAGA TAGAAGAATA AGGAAAGTTT GGGCTTCCAA GTATTGTAAA        780
GTCCCTCCAA AGCTGAAAGA TACAACAGTA ACTAATTCAG ACTTGGACTT GAAGTCTGAT        840
TACTATAGCA AGAAACATTG TCTTAAAAGC TTAAGATCAG AGAGGAACTA TCCAATAAAG        900
AAAAGGAGAT ACTTTGATGG TTATACAGCA TCACAATCCG AGGAAACAAA TAAAAATGAA        960
GGCCAGTCTG GTTCACCTCG AAAGGCTTCA GCTTTTCTAT CATCCATAGC TTGTCAGAAG       1020
CAGCCTGCAG CATTCCAATC ACCAAGAGAT TCTAATAACG TGAAACTTGG AATCAAGTCA       1080
TTTAGAGTCC CTGAACTTTT CATTGAAATT CCAGAGACAG CTACTGTCGG TTCGCTAAAG       1140
AGGACAGTGT TGGAAGCTGT GACCTCGATA CTTGGAGGTG GATTACGCAT AGGTGTTCTG       1200
GTTCATGGGA AAAAGGTTAG AGACGACAGT AAAATGCTTC TACAGACTGG ACTCTCTCTA       1260
GACACTCTTT CAGACACTTT AGGGTTTTGT CTTGAGCCAA ATCCTCCACA ATCCACAAAA       1320
CCACTATCTC CTGAAGATTC TGACTTTGCA CGTCCCTGTA ATGTACCTCA CACTCTAACA       1380
AGGTGTCTCC CATCACCAGG GAAGCATGCT AAACCGAGTA ACTCTGTAGA AAGTGACCTT       1440
GACTCCAAAC CCTCTGCACC AAATAGGGGT AAAACCATCT ACTCGAGAGC CTTGATTCCT       1500
GTATCTCCTC TGCATGCTCA GGCGTTGACA GTAGTCCCAC CTCGGAAAAC CAAGCGATCT       1560
GAAGTGGCAC AGCGTAGGAT CCGTCGACCT TTTTCTGTTG CTGAAGTAGA GGCCCTTGTT       1620
CAAGCTGTGG AGAGACTTGG GACCGGAAGG TGGCGTGACG TAAAATTGCG AGCTTTTGAT       1680
AATGCTAAGC ACCGTACTTA CGTTGATTTG AAGGACAAAT GGAAGACGCT GGTGCACACA       1740
GCAAGAATAT CACCGCAACA AAGGAGAGGT GAGCCAGTTC CACAGGAGCT CTTAGACCGG       1800
GTACTAACGG CTCATGCCTA CTGGTCCCAG CAACAGGGGA AACACCAGTT ACTAGAGGGA       1860
CCCCAGCAGC TCGAGACCAG TCTTGGTCTA TAG                                    1893

	SNP	left flanking [allel] right flanking
	SNP362252	ACAATACCTC[T/T]GGTAATAATG
	SNP362251	GCTTAACGGC[G/G]GCGATATAAT
	SNP362250	CTTAACGGCG[G/G]CGATATAATG
	SNP362249	CGGCGGCGAT[A/A]TAATGGTGGA
	SNP362248	AAGAGACTAC[A/A]AATTCTGATC
	SNP362247	GATCATGATA[A/A]TAATAATGCT
	SNP362246	TCATGATAAT[A/A]ATAATGCTGA
	SNP362245	TAATGCTGAA[C/C]GGAGTTTCTT
	SNP362244	GAGATTCTTC[A/A]AAAATCTCAT
	SNP362243	AAAGCTTTAA[T/T]AGATCTCCAA
	SNP362242	CTTTAATAGA[T/T]CTCCAAGTCC
	SNP362241	TTTAATAGAT[C/C]TCCAAGTCCC
	SNP115738	CCAAGTCCCC[T/T]TAAAGAGTTC
	SNP115737	GTTCCATTTT[G/G]GATCTTCTTC
	SNP115736	AAGATCAATA[A/A]TGGTGATTGC
	SNP362240	CCCAAAATCC[T/T]TCAACATGCT
	SNP115735	TGAAAGATAC[A/A]ACAGTAACTA
	SNP115734	ATGAAGGCCA[G/G]TCTGGTTCAC
	SNP115733	TCTATCATCC[A/A]TAGCTTGTCA
	SNP362239	CATAGCTTGT[C/C]AGAAGCAGCC
	SNP115732	ATAGCTTGTC[A/A]GAAGCAGCCT
	SNP115731	ATTCCAATCA[C/C]CAAGAGATTC
	SNP115730	CATTTAGAGT[C/C]CCTGAACTTT
	SNP115729	TCGGTTCGCT[A/A]AAGAGGACAG
	SNP115728	AGAGGACAGT[G/G]TTGGAAGCTG
	SNP115727	AAGCTGTGAC[C/C]TCGATACTTG
	SNP362238	CTGTGACCTC[G/G]ATACTTGGAG
	SNP115726	TAGGTGTTCT[G/G]GTTCATGGGA
	SNP115725	AAAAGGTTAG[A/A]GACGACAGTA
	SNP115724	CTTCTACAGA[C/C]TGGACTCTCT
	SNP115723	CTCTTTCAGA[C/C]ACTTTAGGGT
	SNP303490	TCCACAAAAC[C/C]ACTATCTCCT
	SNP303489	TGCACGTCCC[T/T]GTAATGTACC
	SNP115722	CTCACACTCT[A/A]ACAAGGTGTC
	SNP115721	CTCCCATCAC[C/C]AGGGAAGCAT
	SNP115720	GCACCAAATA[G/G]GGGTAAAACC
	SNP115719	CCATCTACTC[G/G]AGAGCCTTGA
	SNP115718	TATCTCCTCT[G/G]CATGCTCAGG
	SNP115717	TGCATGCTCA[G/G]GCGTTGACAG
	SNP115716	ATGCTCAGGC[G/G]TTGACAGTAG
	SNP115715	CTAAGCACCG[T/T]ACTTACGTTG
	SNP115714	CACACAGCAA[G/G]AATATCACCG
	SNP115713	AGACCGGGTA[C/C]TAACGGCTCA
	SNP115712	GGGTACTAAC[G/G]GCTCATGCCT
	SNP115711	CTCATGCCTA[C/C]TGGTCCCAGC
	SNP115710	GACCAGTCTT[G/G]GTCTATA...

Sequence: AT1G07540.1

submitter of sequence:	public data
length:	2616
description:	genomic sequence (TAIR 7.0)

AT1G07540.1
ATGGTGTTGC AAAAGAGGCC CGATTATGGA TTCAATGGCT ATGAGGTGCC TCACACACCT         60
CGAGCTGCCA GATCACCAAG AGTAAATACA ATTCTTAACT TTTTTGTGTG TTTCTTATCA        120
GTTTTATATA TGTTCTAATG TTCCCTTCTG ATATATATGT TTGTGTTTTG TGTTTTGCTA        180
GAAGAGTGCT TTCAAGAAGA AAAGCGAAAA CCATCAAATA TCGTCTTTCG ATTTGTTGGC        240
TGCAGTAGCT GGAAAACTGC TGCTTGAAGG TGGGAATTCT TCTTCCTCAA GTAACAATAC        300
CTCTGGTAAT AATGAAGATC AGTGTGCAGT TAAGAAAGAG CCGCTTAACG GCGGCGATAT        360
AATGGTGGAA GAAGAGACTA CAAATTCTGA TCATGATAAT AATAATGCTG AACGGAGTTT        420
CTTTGTCTCT GAGATTCTTC AAAAATCTCA TGAAATGCAA AGCTTTAATA GATCTCCAAG        480
TCCCCTTAAA GAGTTCCATT TTGGATCTTC TTCTGGTATA ACTTCTGATT CCTCTGAGAA        540
GTTTGAAACT CAAGAATTGG CGTATGATGA ATCCAAGATC AATAATGGTG ATTGCTATAG        600
GTCAGAGTCT AATGATAAGA AATCAATGCT TGGAGGGTTA AATTTTGAAG CAAAGTTATC        660
AAGGAATGTT GTAGGTAAGG ATGAGAAACA TATAGGTAGT GGATTCAGGA AACCTATTCC        720
CCAAAATCCT TCAACATGCT CCGATGATGT AGATTTACAC GGTAAGGAAA ATGATGATGG        780
CGAAAACTTC TCAGCCTGTT ACAGAACAAA ATCATTTAGG TCAACTCTGC GTATTGGAGA        840
TAGAAGAATA AGGAAAGTTT GGGCTTCCAA GTATTGTAAA GTCCCTCCAA AGCTGAAAGA        900
TACAACAGTA ACTAATTCAG GTGAACATTA TGGACCATTT GTGAGCAAGT CATATGTACT        960
TTTCAAGATG TTATGGTTTA TTTATGTGTC TTTGTCTGAA AATGTTTTAG ACTTGGACTT       1020
GAAGTCTGAT TACTATAGCA AGAAACATTG TCTTAAAAGC TTAAGATCAG AGAGGAACTA       1080
TCCAATAAAG AAAAGGAGAT ACTTTGATGG TTATACAGCA TCACAATCCG AGGAAACAAA       1140
TAAAAATGAA GGCCAGTCTG GTTCACCTCG AAAGGGTATA TTATCGGAAG CTAGTCATTT       1200
AACGTCAAAA ATCACTTTAC GATGATATAG TGATTAACTT TGAACTTTGT TTTTGGCAGC       1260
TTCAGCTTTT CTATCATCCA TAGCTTGTCA GAAGCAGCCT GCAGCATTCC AATCACCAAG       1320
AGATTCTAAT AACGGTATCT ATTTCTATTG AGGTTTTTTG TTATTTTTAC CAATCAGATT       1380
TTTGTATTAA TTCTGTTCAT TTTTTCTTGT TGTGCTTAGT GAAACTTGGA ATCAAGTCAT       1440
TTAGAGTCCC TGAACTTTTC ATTGAAATTC CAGAGACAGC TACTGTCGGT TCGCTAAAGG       1500
TTAGGATTTT TCGGCTTATA ATTTTCTGGA AGGATCTCCT TCATGTTTAT GGATAATGAT       1560
TGATGAAACT TTACTTCTTC TCGCTAGAGG ACAGTGTTGG AAGCTGTGAC CTCGATACTT       1620
GGAGGTGGAT TACGCATAGG TGTTCTGGTT CATGGGAAAA AGGTTAGAGA CGACAGTAAA       1680
ATGCTTCTAC AGACTGGACT CTCTCTAGAC ACTCTTTCAG ACACTTTAGG GTTTTGTCTT       1740
GAGCCAAATC CTCCACAATC CACAAAACCA CTATCTCCTG AAGATTCTGA CTTTGCACGT       1800
CCCTGTAATG TACCTCACAC TCTAACAAGG TCAGTCTCTA TCCAGAGGTC AATGTATGCT       1860
GCTTCTTTCT TTAGTGTAGA GAAGAACTCT GTTTCTGATG TTTTCCAAAA CTTTTTTGAC       1920
ATCATTAGGT GTCTCCCATC ACCAGGGAAG CATGCTAAAC CGAGTAACTC TGTAGAAAGT       1980
GACCTTGACT CCAAACCCTC TGCACCAAAT AGGGGTAAAA CCATCTACTC GAGAGCCTTG       2040
ATTCCTGTAT CTCCTCTGCA TGCTCAGGCG TTGACAGTAG TCCCACCTCG GAAAACCAAG       2100
CGATCTGAAG TGGCACAGCG TAGGATCCGT CGACCTTTTT CTGTTGCTGA AGTAGAGGCC       2160
CTTGTTCAAG CTGTGGAGAG ACTTGGGACC GGAAGGTAAC TAAATTTTTT ATGTTCACCA       2220
AAGTATAAGA CTTAATTTCC ATCAATAATT GGTTCAAGAT AGTTCTAAGA TTGTTGTGCA       2280
TATCTATCTG CAGGTGGCGT GACGTAAAAT TGCGAGCTTT TGATAATGCT AAGCACCGTA       2340
CTTACGTTGA TTTGAAGGTA AAATAAAACT CTCTCCTTAC AGTGAATGAG GTCTATGTTT       2400
CTTGTGCAAG AAGTAACTAA TTTTGGGATT GATTAGGACA AATGGAAGAC GCTGGTGCAC       2460
ACAGCAAGAA TATCACCGCA ACAAAGGAGA GGTGAGCCAG TTCCACAGGA GCTCTTAGAC       2520
CGGGTACTAA CGGCTCATGC CTACTGGTCC CAGCAACAGG GGAAACACCA GTTACTAGAG       2580
GGACCCCAGC AGCTCGAGAC CAGTCTTGGT CTATAG                                 2616

Sequence: AT1G07540.1

submitter of sequence:	public data
length:	1893
description:	coding sequence (TAIR 7.0)

AT1G07540.1
ATGGTGTTGC AAAAGAGGCC CGATTATGGA TTCAATGGCT ATGAGGTGCC TCACACACCT         60
CGAGCTGCCA GATCACCAAG AAAGAGTGCT TTCAAGAAGA AAAGCGAAAA CCATCAAATA        120
TCGTCTTTCG ATTTGTTGGC TGCAGTAGCT GGAAAACTGC TGCTTGAAGG TGGGAATTCT        180
TCTTCCTCAA GTAACAATAC CTCTGGTAAT AATGAAGATC AGTGTGCAGT TAAGAAAGAG        240
CCGCTTAACG GCGGCGATAT AATGGTGGAA GAAGAGACTA CAAATTCTGA TCATGATAAT        300
AATAATGCTG AACGGAGTTT CTTTGTCTCT GAGATTCTTC AAAAATCTCA TGAAATGCAA        360
AGCTTTAATA GATCTCCAAG TCCCCTTAAA GAGTTCCATT TTGGATCTTC TTCTGGTATA        420
ACTTCTGATT CCTCTGAGAA GTTTGAAACT CAAGAATTGG CGTATGATGA ATCCAAGATC        480
AATAATGGTG ATTGCTATAG GTCAGAGTCT AATGATAAGA AATCAATGCT TGGAGGGTTA        540
AATTTTGAAG CAAAGTTATC AAGGAATGTT GTAGGTAAGG ATGAGAAACA TATAGGTAGT        600
GGATTCAGGA AACCTATTCC CCAAAATCCT TCAACATGCT CCGATGATGT AGATTTACAC        660
GGTAAGGAAA ATGATGATGG CGAAAACTTC TCAGCCTGTT ACAGAACAAA ATCATTTAGG        720
TCAACTCTGC GTATTGGAGA TAGAAGAATA AGGAAAGTTT GGGCTTCCAA GTATTGTAAA        780
GTCCCTCCAA AGCTGAAAGA TACAACAGTA ACTAATTCAG ACTTGGACTT GAAGTCTGAT        840
TACTATAGCA AGAAACATTG TCTTAAAAGC TTAAGATCAG AGAGGAACTA TCCAATAAAG        900
AAAAGGAGAT ACTTTGATGG TTATACAGCA TCACAATCCG AGGAAACAAA TAAAAATGAA        960
GGCCAGTCTG GTTCACCTCG AAAGGCTTCA GCTTTTCTAT CATCCATAGC TTGTCAGAAG       1020
CAGCCTGCAG CATTCCAATC ACCAAGAGAT TCTAATAACG TGAAACTTGG AATCAAGTCA       1080
TTTAGAGTCC CTGAACTTTT CATTGAAATT CCAGAGACAG CTACTGTCGG TTCGCTAAAG       1140
AGGACAGTGT TGGAAGCTGT GACCTCGATA CTTGGAGGTG GATTACGCAT AGGTGTTCTG       1200
GTTCATGGGA AAAAGGTTAG AGACGACAGT AAAATGCTTC TACAGACTGG ACTCTCTCTA       1260
GACACTCTTT CAGACACTTT AGGGTTTTGT CTTGAGCCAA ATCCTCCACA ATCCACAAAA       1320
CCACTATCTC CTGAAGATTC TGACTTTGCA CGTCCCTGTA ATGTACCTCA CACTCTAACA       1380
AGGTGTCTCC CATCACCAGG GAAGCATGCT AAACCGAGTA ACTCTGTAGA AAGTGACCTT       1440
GACTCCAAAC CCTCTGCACC AAATAGGGGT AAAACCATCT ACTCGAGAGC CTTGATTCCT       1500
GTATCTCCTC TGCATGCTCA GGCGTTGACA GTAGTCCCAC CTCGGAAAAC CAAGCGATCT       1560
GAAGTGGCAC AGCGTAGGAT CCGTCGACCT TTTTCTGTTG CTGAAGTAGA GGCCCTTGTT       1620
CAAGCTGTGG AGAGACTTGG GACCGGAAGG TGGCGTGACG TAAAATTGCG AGCTTTTGAT       1680
AATGCTAAGC ACCGTACTTA CGTTGATTTG AAGGACAAAT GGAAGACGCT GGTGCACACA       1740
GCAAGAATAT CACCGCAACA AAGGAGAGGT GAGCCAGTTC CACAGGAGCT CTTAGACCGG       1800
GTACTAACGG CTCATGCCTA CTGGTCCCAG CAACAGGGGA AACACCAGTT ACTAGAGGGA       1860
CCCCAGCAGC TCGAGACCAG TCTTGGTCTA TAG                                    1893