•Home    •Contact   •FAQs   •Imprint   •Login  
 
 
 
 
 
 
 
 
 
   
 
   
 
  
 
   
 search 
 for 
Help

Gene: AT5G02740.2


  Alternative name:AT5G02740

Genotype (Genotype)
  species: Arabidopsis thaliana
  type: wildtype
  common name: thale cress
  cultivar: Columbia

Gene function:
similar to unknown [Helianthus annuus] (GB:AAR23805.1) (TAIR 7.0)
nucleotide binding similar to unknown [Helianthus annuus] (GB:AAR23805.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) (MapMan)
MapMan Annotation:
BIN  35.2: not assigned.unknown
BIN  35: not assigned

Related with
MSU_p955J1415 cDNA clone
250969_at Affymetrix representative on ATH1-121501

Orthologues and co-orthologues identified by INPARANOID
AT5G02740.1 Arabidopsis thaliana
LOC_Os03g17450.1 Oryza sativa japonica

External resources
TAIR
MIPS
PlnTFDB
Aramemnon
SUBA
Arabidopsis eFP browser
Cell eFP Browser
Atted
ProMEX
IntAct
PhosPhAT
iHOP (AT5G02740)
 
Sequence: AT5G02740.2
submitter of sequence: public data
length: 186
description: amino acid sequence (TAIR 7.0) 
AT5G02740.2
MSITRSAIRS SLCLRKLDPE ISRSSLPFLQ EWRKCLSTAT EQPPPASPLP PPPGGSPGEG         60
RFYGKFSGFS KHALKTDIMN VLEGCSLTSD DLKFNYPRGG NLTPAAVFVQ FPSLSAYDKA        120
LRNIAKKGKL YRLEKAARAQ WDPIVPYEGK VVALHGIPVN AITDDIDRFL SGCLYYPGSI        180
QFLTV*                                                                   186
 
Sequence: AT5G02740.2
submitter of sequence: public data
length: 1517
description: cdna sequence (TAIR 7.0)
Sequence features and Clone alignments (BLAST):
Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu Click for Menu

Gene structure   UTR    start codon    stop codon    exon-exon border 
Clone alignments   forward    reverse    start    stop 
Protein domains   domain       
Click on sequence features to obtain additional information.
 
AT5G02740.2
TTTCGAATCT TCTTCACCGT GTTCGTCATC GTCACCACTG AGACTCTCTG TAGAGAAAAA         60
CCCTAGACAT TTTCCGGTGA GAAATGAGTA TCACTCGTAG CGCGATCAGA TCGAGTTTGT        120
GTCTCCGGAA ATTGGATCCG GAAATCAGTC GTAGCTCGCT TCCGTTTCTT CAAGAGTGGA        180
GGAAATGCCT ATCTACCGCC ACGGAGCAGC CTCCTCCTGC CTCTCCGTTA CCACCGCCTC        240
CGGGAGGTTC TCCGGGAGAA GGGAGGTTTT ATGGGAAGTT TTCAGGCTTT TCAAAACATG        300
CTCTGAAGAC AGACATAATG AACGTACTCG AGGGCTGCAG TCTGACATCA GATGATCTCA        360
AATTCAACTA TCCGCGTGGC GGAAACTTAA CTCCTGCGGC AGTCTTTGTG CAGTTCCCAT        420
CCCTTTCCGC ATATGATAAA GCACTGCGGA ATATCGCAAA GAAAGGAAAG CTATATAGAT        480
TAGAAAAGGC TGCTCGTGCT CAGTGGGATC CCATTGTTCC TTATGAGGGG AAAGTGGTTG        540
CACTACATGG GATTCCGGTG AATGCTATAA CAGATGACAT AGATAGGTTC TTATCTGGCT        600
GTCTCTATTA TCCTGGATCC ATCCAGTTCC TCACAGTGTG AGTAATTATT GGGTTTACTA        660
ATTCTTATTT TATTAGTACC CTGTTTTGTA CTTTACTCGA TCCGCATTTG ATTAGCCGTT        720
AGTTGGACCT GCAGTCTTGC AAAGGCAGTG CTCTCCTGTT TGATTCATCA GTTGCACTGA        780
TGTTTAATCA TATTACTCAC TAGAATAAGC AAATAGTACA GATGTAATAT AAATAGCTTT        840
CGCCGGGAAC TATAGGAGGA GTGATAGCAC TCACTCCTGA CTGTCATATT TTTTTTATTT        900
TCTCGAGTAC GACATGTGAT ATCTTGTCAC CTTGTTAGAC ATCATATCTA GAAATCTTTG        960
TGTTCTATGC CTATAGTCGT GTTGTGCAGC AGTTTCTGGA TTACTGATAA TATGAGGACA       1020
TGAAACTATT TTAATGCCTT CTTTTACCAT GCAGTCAAGG ACTTGGAACT TCAAAGAGGG       1080
TAGCATTGGT GCGTTTCACA TCACAAACCC AGGCAATGAA CGCATACATT ACAAAGAACA       1140
GGAACTTCCT TCTCAACCAA CGAATCACAT TGCAAGTTCT GCAGTAATTT CTTAGTTTCT       1200
ATTCCATTCT CGTGGTGTAT TCCAATGGTA AGAGATCCAA AGCACTTTCT TTTGTCTCTA       1260
CTGTTGGGAT GTTTTAGGTC GATTTGGTTA TCAAAAATTT CCATCTGCAA ACTTCACGAT       1320
GCTTGATAAA CTGTTGTTGT CTCTCTCTTC CCTGGTTCAG TTCGAAGTTG ATGAATAACA       1380
AATACATGTG TCTTAGTAGA AGCAGAAAGT CTCACATAAG CAGATGTTAT ACTATGTGAT       1440
CTTTTTCTCT TTCTTGTATT TTGACTAAAG CTGTTATCAT TGGATGCCCA TGTGGTGAAG       1500
TGATCCATCG TGCTTTT                                                      1517
SNPleft flanking [allel] right flanking
SNP88447 ATGAGTATCA[C/C]TCGTAGCGCG
SNP88449 TTGTGTCTCC[G/G]GAAATTGGAT
SNP88451 GGATCCGGAA[A/A]TCAGTCGTAG
SNP88453 ACGGAGCAGC[C/C]TCCTCCTGCC
SNP88455 GGAAACTTAA[C/C]TCCTGCGGCA
SNP88457 CTGGCTGTCT[C/C]TATTATCCTG
 
Sequence: AT5G02740.2
submitter of sequence: public data
length: 2164
description: genomic sequence (TAIR 7.0) 
AT5G02740.2
TTTCGAATCT TCTTCACCGT GTTCGTCATC GTCACCACTG AGACTCTCTG TAGAGAAAAA         60
CCCTAGACAT TTTCCGGTGA GAAATGAGTA TCACTCGTAG CGCGATCAGA TCGAGTTTGT        120
GTCTCCGGAA ATTGGATCCG GAAATCAGTC GTAGCTCGCT TCCGTTTCTT CAAGAGTGGA        180
GGAAATGCCT ATCTACCGCC ACGGAGCAGC CTCCTCCTGC CTCTCCGTTA CCACCGCCTC        240
CGGGAGGTTC TCCGGGAGAA GGTTTTCTCT TTTATTTCAT TCCATTTATC TAGTGTTTCT        300
TTGAGAGCAT TTCTCCAATT TGTGAGGGCA AAGATCCTAG ATCATAGATT GCAGAGTTTT        360
GATTTGTTTG GAGTGTGTAT ATCTGAAGCT ATTGAAATTG AAAATGTTGG TTTCAAATTT        420
AACCGCAGAG GCTATTATCG AATTTTGCTA TCCAAAAATG CGGACTTTGT TTACTTTGAC        480
TGTTATGGTT TTGAGACTTT GTTTAGCTCA CTATGAAGGA TGTTCCTTGA TGTGTTTTTC        540
TTATTTCTTT TTGCAGGGAG GTTTTATGGG AAGTTTTCAG GCTTTTCAAA ACATGCTCTG        600
AAGACAGACA TAATGAACGT ACTCGAGGGC TGCAGTCTGA CATCAGATGA TCTCAAATTC        660
AACTATCCGC GTGGCGGAAA CTTAACTCCT GCGGCAGTGT AAGTCTTAAG CTTTATTAAT        720
TCTCTGGATT GTTACTTTGG AAGAGAGGAA TTCGAATCCA AACTAATGAA TTTCTATCCT        780
TTTTCATTCT CGACAATGTT GGTATATATC AGCTTTGTGC AGTTCCCATC CCTTTCCGCA        840
TATGATAAAG CACTGCGGAA TATCGCAAAG AAAGGAAAGC TATATAGATT AGAAAAGGTA        900
ATCCTTTTAC ATTCTATAGA GTCCATATTT ATTTCCGTTT TACAAACAAA GAAAGTATTC        960
GTATGCTAGA TGGCTATTTA ATCTGGAGTT GATTCCTTGT CGATGATTAG GCTGCTCGTG       1020
CTCAGTGGGA TCCCATTGTT CCTTATGAGG GGAAAGTGGT AAGCTATGTA TTCTGTCATA       1080
ACTTATAGTA TTATCGAGGT TTGTTCTCAC TTCTCAGACA ACTGGTCTGA CATAAATTGT       1140
AATTGGTACC AACTAATATT TGATGAAATT TTATATTGTT TAGGTTGCAC TACATGGGAT       1200
TCCGGTGAAT GCTATAACAG ATGACATAGA TAGGTTCTTA TCTGGCTGTC TCTATTATCC       1260
TGGATCCATC CAGTTCCTCA CAGTGTGAGT AATTATTGGG TTTACTAATT CTTATTTTAT       1320
TAGTACCCTG TTTTGTACTT TACTCGATCC GCATTTGATT AGCCGTTAGT TGGACCTGCA       1380
GTCTTGCAAA GGCAGTGCTC TCCTGTTTGA TTCATCAGTT GCACTGATGT TTAATCATAT       1440
TACTCACTAG AATAAGCAAA TAGTACAGAT GTAATATAAA TAGCTTTCGC CGGGAACTAT       1500
AGGAGGAGTG ATAGCACTCA CTCCTGACTG TCATATTTTT TTTATTTTCT CGAGTACGAC       1560
ATGTGATATC TTGTCACCTT GTTAGACATC ATATCTAGAA ATCTTTGTGT TCTATGCCTA       1620
TAGTCGTGTT GTGCAGCAGT TTCTGGATTA CTGATAATAT GAGGACATGA AACTATTTTA       1680
ATGCCTTCTT TTACCATGCA GTCAAGGACT TGGAACTTCA AAGAGGGTAG CATTGGTGCG       1740
TTTCACATCA CAAACCCAGG CAATGAACGC ATACATTACA AAGAACAGGA ACTTCCTTCT       1800
CAACCAACGA ATCACATTGC AAGTTCTGCA GTAATTTCTT AGTTTCTATT CCATTCTCGT       1860
GGTGTATTCC AATGGTAAGA GATCCAAAGC ACTTTCTTTT GTCTCTACTG TTGGGATGTT       1920
TTAGGTCGAT TTGGTTATCA AAAATTTCCA TCTGCAAACT TCACGATGCT TGATAAACTG       1980
TTGTTGTCTC TCTCTTCCCT GGTTCAGTTC GAAGTTGATG AATAACAAAT ACATGTGTCT       2040
TAGTAGAAGC AGAAAGTCTC ACATAAGCAG ATGTTATACT ATGTGATCTT TTTCTCTTTC       2100
TTGTATTTTG ACTAAAGCTG TTATCATTGG ATGCCCATGT GGTGAAGTGA TCCATCGTGC       2160
TTTT                                                                    2164
 
Sequence: AT5G02740.2
submitter of sequence: public data
length: 558
description: coding sequence (TAIR 7.0) 
AT5G02740.2
ATGAGTATCA CTCGTAGCGC GATCAGATCG AGTTTGTGTC TCCGGAAATT GGATCCGGAA         60
ATCAGTCGTA GCTCGCTTCC GTTTCTTCAA GAGTGGAGGA AATGCCTATC TACCGCCACG        120
GAGCAGCCTC CTCCTGCCTC TCCGTTACCA CCGCCTCCGG GAGGTTCTCC GGGAGAAGGG        180
AGGTTTTATG GGAAGTTTTC AGGCTTTTCA AAACATGCTC TGAAGACAGA CATAATGAAC        240
GTACTCGAGG GCTGCAGTCT GACATCAGAT GATCTCAAAT TCAACTATCC GCGTGGCGGA        300
AACTTAACTC CTGCGGCAGT CTTTGTGCAG TTCCCATCCC TTTCCGCATA TGATAAAGCA        360
CTGCGGAATA TCGCAAAGAA AGGAAAGCTA TATAGATTAG AAAAGGCTGC TCGTGCTCAG        420
TGGGATCCCA TTGTTCCTTA TGAGGGGAAA GTGGTTGCAC TACATGGGAT TCCGGTGAAT        480
GCTATAACAG ATGACATAGA TAGGTTCTTA TCTGGCTGTC TCTATTATCC TGGATCCATC        540
CAGTTCCTCA CAGTGTGA                                                      558
GabiPD Webmaster